Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica

J Hör, G Matera, J Vogel, S Gottesman, G Storz - EcoSal Plus, 2020 - journals.asm.org
The last few decades have led to an explosion in our understanding of the major roles that
small regulatory RNAs (sRNAs) play in regulatory circuits and the responses to stress in …

Small RNAs in bacteria and archaea: who they are, what they do, and how they do it

EGH Wagner, P Romby - Advances in genetics, 2015 - Elsevier
Small RNAs are ubiquitously present regulators in all kingdoms of life. Most bacterial and
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …

Global map** of small RNA-target interactions in bacteria

S Melamed, A Peer, R Faigenbaum-Romm, YE Gatt… - Molecular cell, 2016 - cell.com
Small RNAs (sRNAs) associated with the RNA chaperon protein Hfq are key
posttranscriptional regulators of gene expression in bacteria. Deciphering the sRNA-target …

IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions

M Mann, PR Wright, R Backofen - Nucleic acids research, 2017 - academic.oup.com
The IntaRNA algorithm enables fast and accurate prediction of RNA–RNA hybrids by
incorporating seed constraints and interaction site accessibility. Here, we introduce …

[HTML][HTML] Regulation by small RNAs in bacteria: expanding frontiers

G Storz, J Vogel, KM Wassarman - Molecular cell, 2011 - cell.com
Research on the discovery and characterization of small, regulatory RNAs in bacteria has
exploded in recent years. These sRNAs act by base pairing with target mRNAs with which …

The global RNA–RNA interactome of Klebsiella pneumoniae unveils a small RNA regulator of cell division

E Ruhland, M Siemers, R Gerst, F Späth… - Proceedings of the …, 2024 - pnas.org
The ubiquitous RNA chaperone Hfq is involved in the regulation of key biological processes
in many species across the bacterial kingdom. In the opportunistic human pathogen …

Bacterial RNA biology on a genome scale

J Hör, SA Gorski, J Vogel - Molecular cell, 2018 - cell.com
Bacteria are an exceedingly diverse group of organisms whose molecular exploration is
experiencing a renaissance. While the classical view of bacterial gene expression was …

An overview of gene regulation in bacteria by small RNAs derived from mRNA 3′ ends

F Ponath, J Hör, J Vogel - FEMS microbiology reviews, 2022 - academic.oup.com
Over the past two decades, small noncoding RNAs (sRNAs) that regulate mRNAs by short
base pairing have gone from a curiosity to a major class of post-transcriptional regulators in …

An atlas of Hfq‐bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

Y Chao, K Papenfort, R Reinhardt, CM Sharma… - The EMBO …, 2012 - embopress.org
The small RNAs associated with the protein Hfq constitute one of the largest classes of post‐
transcriptional regulators known to date. Most previously investigated members of this class …

sRNA-mediated control of transcription termination in E. coli

N Sedlyarova, I Shamovsky, BK Bharati, V Epshtein… - Cell, 2016 - cell.com
Bacterial small RNAs (sRNAs) have been implicated in various aspects of post-
transcriptional gene regulation. Here, we demonstrate that sRNAs also act at the level of …