[HTML][HTML] Saturated reconstruction of a volume of neocortex

N Kasthuri, KJ Hayworth, DR Berger, RL Schalek… - Cell, 2015 - cell.com
We describe automated technologies to probe the structure of neural tissue at nanometer
resolution and use them to generate a saturated reconstruction of a sub-volume of mouse …

FlyWire: online community for whole-brain connectomics

S Dorkenwald, CE McKellar, T Macrina, N Kemnitz… - Nature …, 2022 - nature.com
Due to advances in automated image acquisition and analysis, whole-brain connectomes
with 100,000 or more neurons are on the horizon. Proofreading of whole-brain automated …

Quantitative neuroanatomy for connectomics in Drosophila

CM Schneider-Mizell, S Gerhard, M Longair… - Elife, 2016 - elifesciences.org
Neuronal circuit map** using electron microscopy demands laborious proofreading or
reconciliation of multiple independent reconstructions. Here, we describe new methods to …

[HTML][HTML] CAVE: Connectome annotation versioning engine

S Dorkenwald, CM Schneider-Mizell, D Brittain… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Abstract Advances in Electron Microscopy, image segmentation and computational
infrastructure have given rise to large-scale and richly annotated connectomic datasets …

A survey of visualization and analysis in high‐resolution connectomics

J Beyer, J Troidl, S Boorboor… - Computer Graphics …, 2022 - Wiley Online Library
The field of connectomics aims to reconstruct the wiring diagram of Neurons and synapses
to enable new insights into the workings of the brain. Reconstructing and analyzing the …

Neutu: software for collaborative, large-scale, segmentation-based connectome reconstruction

T Zhao, DJ Olbris, Y Yu, SM Plaza - Frontiers in Neural Circuits, 2018 - frontiersin.org
Reconstructing a connectome from an EM dataset often requires a large effort of
proofreading automatically generated segmentations. While many tools exist to enable …

A survey of designs for combined 2D+ 3D visual representations

J Hong, R Hnatyshyn, EAD Santos… - … on Visualization and …, 2024 - ieeexplore.ieee.org
We examine visual representations of data that make use of combinations of both 2D and
3D data map**s. Combining 2D and 3D representations is a common technique that …

UNI-EM: an environment for deep neural network-based automated segmentation of neuronal electron microscopic images

H Urakubo, T Bullmann, Y Kubota, S Oba, S Ishii - Scientific reports, 2019 - nature.com
Recently, there has been rapid expansion in the field of micro-connectomics, which targets
the three-dimensional (3D) reconstruction of neuronal networks from stacks of two …

Neurolines: a subway map metaphor for visualizing nanoscale neuronal connectivity

AK Al-Awami, J Beyer, H Strobelt… - … on Visualization and …, 2014 - ieeexplore.ieee.org
We present NeuroLines, a novel visualization technique designed for scalable detailed
analysis of neuronal connectivity at the nanoscale level. The topology of 3D brain tissue …

State‐of‐the‐Art Report in Web‐based Visualization

F Mwalongo, M Krone, G Reina… - Computer graphics …, 2016 - Wiley Online Library
In this report, we review the current state of the art of web‐based visualization applications.
Recently, an increasing number of web‐based visualization applications have emerged …