Autonomous discovery in the chemical sciences part I: Progress

CW Coley, NS Eyke, KF Jensen - … Chemie International Edition, 2020‏ - Wiley Online Library
This two‐part Review examines how automation has contributed to different aspects of
discovery in the chemical sciences. In this first part, we describe a classification for …

Predicting protein function from sequence and structure

D Lee, O Redfern, C Orengo - Nature reviews molecular cell biology, 2007‏ - nature.com
While the number of sequenced genomes continues to grow, experimentally verified
functional annotation of whole genomes remains patchy. Structural genomics projects are …

Integration of biological networks and gene expression data using Cytoscape

MS Cline, M Smoot, E Cerami, A Kuchinsky… - Nature protocols, 2007‏ - nature.com
Cytoscape is a free software package for visualizing, modeling and analyzing molecular and
genetic interaction networks. This protocol explains how to use Cytoscape to analyze the …

A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts

D Westergaard, HH Stærfeldt, C Tønsberg… - PLoS computational …, 2018‏ - journals.plos.org
Across academia and industry, text mining has become a popular strategy for kee** up
with the rapid growth of the scientific literature. Text mining of the scientific literature has …

Literature mining for the biologist: from information retrieval to biological discovery

LJ Jensen, J Saric, P Bork - Nature reviews genetics, 2006‏ - nature.com
For the average biologist, hands-on literature mining currently means a keyword search in
PubMed. However, methods for extracting biomedical facts from the scientific literature have …

Evaluation of China's new energy vehicle policy texts with quantitative and qualitative analysis

X Wang, L Huang, T Daim, X Li, Z Li - Technology in Society, 2021‏ - Elsevier
As one of the strategic emerging industries, the new energy vehicle (NEV) industry receives
strong support from the Chinese government. The Chinese government has formulated a …

Application of text mining in the biomedical domain

WWM Fleuren, W Alkema - Methods, 2015‏ - Elsevier
In recent years the amount of experimental data that is produced in biomedical research and
the number of papers that are being published in this field have grown rapidly. In order to …

Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions

S Raychaudhuri, RM Plenge, EJ Rossin, ACY Ng… - PLoS …, 2009‏ - journals.plos.org
Translating a set of disease regions into insight about pathogenic mechanisms requires not
only the ability to identify the key disease genes within them, but also the biological …

Frontiers of biomedical text mining: current progress

P Zweigenbaum, D Demner-Fushman… - Briefings in …, 2007‏ - academic.oup.com
It is now almost 15 years since the publication of the first paper on text mining in the
genomics domain, and decades since the first paper on text mining in the medical domain …

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae

T Reguly, A Breitkreutz, L Boucher, BJ Breitkreutz… - Journal of biology, 2006‏ - Springer
Background The study of complex biological networks and prediction of gene function has
been enabled by high-throughput (HTP) methods for detection of genetic and protein …