Phage diversity, genomics and phylogeny
Recent advances in viral metagenomics have enabled the rapid discovery of an
unprecedented catalogue of phages in numerous environments, from the human gut to the …
unprecedented catalogue of phages in numerous environments, from the human gut to the …
Minimum information about an uncultivated virus genome (MIUViG)
We present an extension of the Minimum Information about any (x) Sequence (MIxS)
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
A roadmap for genome-based phage taxonomy
Bacteriophage (phage) taxonomy has been in flux since its inception over four decades ago.
Genome sequencing has put pressure on the classification system and recent years have …
Genome sequencing has put pressure on the classification system and recent years have …
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
Microbiomes from every environment contain a myriad of uncultivated archaeal and
bacterial viruses, but studying these viruses is hampered by the lack of a universal, scalable …
bacterial viruses, but studying these viruses is hampered by the lack of a universal, scalable …
INfrastructure for a PHAge REference database: identification of large-scale biases in the current collection of cultured phage genomes
Background: With advances in sequencing technology and decreasing costs, the number of
phage genomes that have been sequenced has increased markedly in the past decade …
phage genomes that have been sequenced has increased markedly in the past decade …
[HTML][HTML] The gut virome database reveals age-dependent patterns of virome diversity in the human gut
The gut microbiome profoundly affects human health and disease, and their infecting viruses
are likely as important, but often missed because of reference database limitations. Here, we …
are likely as important, but often missed because of reference database limitations. Here, we …
ViPTree: the viral proteomic tree server
ViPTree is a web server provided through GenomeNet to generate viral proteomic trees for
classification of viruses based on genome-wide similarities. Users can upload viral genomes …
classification of viruses based on genome-wide similarities. Users can upload viral genomes …
Virus taxonomy in the age of metagenomics
The number and diversity of viral sequences that are identified in metagenomic data far
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Ocean microbes drive biogeochemical cycling on a global scale. However, this cycling is
constrained by viruses that affect community composition, metabolic activity, and …
constrained by viruses that affect community composition, metabolic activity, and …
Uncovering Earth's virome
Viruses are the most abundant biological entities on Earth, but challenges in detecting,
isolating, and classifying unknown viruses have prevented exhaustive surveys of the global …
isolating, and classifying unknown viruses have prevented exhaustive surveys of the global …