Codon usage bias
ST Parvathy, V Udayasuriyan, V Bhadana - Molecular biology reports, 2022 - Springer
Codon usage bias is the preferential or non-random use of synonymous codons, a
ubiquitous phenomenon observed in bacteria, plants and animals. Different species have …
ubiquitous phenomenon observed in bacteria, plants and animals. Different species have …
SARS coronavirus 2: from genome to infectome
M Rastogi, N Pandey, A Shukla, SK Singh - Respiratory research, 2020 - Springer
Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) belongs to the group of
Betacoronaviruses. The SARS-CoV-2 is closely related to SARS-CoV-1 and probably …
Betacoronaviruses. The SARS-CoV-2 is closely related to SARS-CoV-1 and probably …
Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome
PR Bhatt, A Scaiola, G Loughran, M Leibundgut… - Science, 2021 - science.org
Programmed ribosomal frameshifting is a key event during translation of the severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA genome that allows synthesis of the …
respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA genome that allows synthesis of the …
Structural and functional conservation of the programmed− 1 ribosomal frameshift signal of SARS coronavirus 2 (SARS-CoV-2)
Approximately 17 years after the severe acute respiratory syndrome coronavirus (SARS-
CoV) epidemic, the world is currently facing the COVID-19 pandemic caused by SARS …
CoV) epidemic, the world is currently facing the COVID-19 pandemic caused by SARS …
Disome and trisome profiling reveal genome-wide targets of ribosome quality control
S Meydan, NR Guydosh - Molecular cell, 2020 - cell.com
The ribosome-associated protein quality control (RQC) system that resolves stalled
translation events is activated when ribosomes collide and form disome, trisome, or higher …
translation events is activated when ribosomes collide and form disome, trisome, or higher …
The AAA+ superfamily: a review of the structural and mechanistic principles of these molecular machines
ATPases associated with diverse cellular activities (AAA+ proteins) are a superfamily of
proteins found throughout all domains of life. The hallmark of this family is a conserved …
proteins found throughout all domains of life. The hallmark of this family is a conserved …
Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation
In the modern genomic era, scientists without extensive bioinformatic training need to apply
high-power computational analyses to critical tasks like phage genome annotation. At the …
high-power computational analyses to critical tasks like phage genome annotation. At the …
Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes
Efforts to precisely identify tumor human leukocyte antigen (HLA) bound peptides capable of
mediating T cell-based tumor rejection still face important challenges. Recent studies …
mediating T cell-based tumor rejection still face important challenges. Recent studies …
Retapamulin-assisted ribosome profiling reveals the alternative bacterial proteome
The use of alternative translation initiation sites enables production of more than one protein
from a single gene, thereby expanding the cellular proteome. Although several such …
from a single gene, thereby expanding the cellular proteome. Although several such …
The SARS-CoV-2 programmed− 1 ribosomal frameshifting element crystal structure solved to 2.09 Å using chaperone-assisted RNA crystallography
The programmed− 1 ribosomal frameshifting element (PFSE) of SARS-CoV-2 is a well
conserved structured RNA found in all coronaviruses' genomes. By adopting a pseudoknot …
conserved structured RNA found in all coronaviruses' genomes. By adopting a pseudoknot …