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Self-diffusion coefficient of bulk and confined water: a critical review of classical molecular simulation studies
We present a detailed overview of classical molecular simulation studies examining the self-
diffusion coefficient of water. The self-diffusion coefficient is directly associated with the …
diffusion coefficient of water. The self-diffusion coefficient is directly associated with the …
Classical electrostatics for biomolecular simulations
Classical atomistic simulations, also known as molecular mechanics simulations, use simple
potential-energy functions to model molecular systems at the atomic level. In this …
potential-energy functions to model molecular systems at the atomic level. In this …
Condensates formed by prion-like low-complexity domains have small-world network structures and interfaces defined by expanded conformations
Biomolecular condensates form via coupled associative and segregative phase transitions
of multivalent associative macromolecules. Phase separation coupled to percolation is one …
of multivalent associative macromolecules. Phase separation coupled to percolation is one …
Accuracy limit of rigid 3-point water models
Classical 3-point rigid water models are most widely used due to their computational
efficiency. Recently, we introduced a new approach to constructing classical rigid water …
efficiency. Recently, we introduced a new approach to constructing classical rigid water …
Simulating water with rigid non-polarizable models: a general perspective
Over the last forty years many computer simulations of water have been performed using
rigid non-polarizable models. Since these models describe water interactions in an …
rigid non-polarizable models. Since these models describe water interactions in an …
Biomolecular force fields: where have we been, where are we now, where do we need to go and how do we get there?
P Dauber-Osguthorpe, AT Hagler - Journal of computer-aided molecular …, 2019 - Springer
In this perspective, we review the theory and methodology of the derivation of force fields
(FFs), and their validity, for molecular simulations, from their inception in the second half of …
(FFs), and their validity, for molecular simulations, from their inception in the second half of …
Biomolecular electrostatics and solvation: a computational perspective
An understanding of molecular interactions is essential for insight into biological systems at
the molecular scale. Among the various components of molecular interactions, electrostatics …
the molecular scale. Among the various components of molecular interactions, electrostatics …
Interfacial gas enrichment at hydrophobic surfaces and the origin of promotion of gas hydrate formation by hydrophobic solid particles
Hydrophobic solid surfaces have been found to promote the formation of gas hydrates
effectively and thus help to realize the immense potential applications of hydrates in many …
effectively and thus help to realize the immense potential applications of hydrates in many …
Solubility of water in hydrogen at high pressures: a molecular simulation study
Hydrogen is one of the most popular alternatives for energy storage. Because of its low
volumetric energy density, hydrogen should be compressed for practical storage and …
volumetric energy density, hydrogen should be compressed for practical storage and …
Advanced models for water simulations
Molecular simulations of water using classical, molecular mechanic potential energy
functions have enjoyed a 50‐year history of development, and much has been learned …
functions have enjoyed a 50‐year history of development, and much has been learned …