Open challenges for microbial network construction and analysis

K Faust - The ISME Journal, 2021 - academic.oup.com
Microbial network construction is a popular explorative data analysis technique in
microbiome research. Although a large number of microbial network construction tools has …

[HTML][HTML] Benthic habitat map**: A review of three decades of map** biological patterns on the seafloor

B Misiuk, CJ Brown - Estuarine, Coastal and Shelf Science, 2024 - Elsevier
What is benthic habitat map**, how is it accomplished, and how has that changed over
time? We query the published literature to answer these questions and synthesize the …

Selecting critical features for data classification based on machine learning methods

RC Chen, C Dewi, SW Huang, RE Caraka - Journal of Big Data, 2020 - Springer
Feature selection becomes prominent, especially in the data sets with many variables and
features. It will eliminate unimportant variables and improve the accuracy as well as the …

Co‐occurrence is not evidence of ecological interactions

FG Blanchet, K Cazelles, D Gravel - Ecology Letters, 2020 - Wiley Online Library
There is a rich amount of information in co‐occurrence (presence–absence) data that could
be used to understand community assembly. This proposition first envisioned by Forbes …

Top ten hazards to avoid when modeling species distributions: a didactic guide of assumptions, problems, and recommendations

M Soley‐Guardia, DF Alvarado‐Serrano… - Ecography, 2024 - Wiley Online Library
Species distribution models, also known as ecological niche models or habitat suitability
models, have become commonplace for addressing fundamental and applied biodiversity …

Outstanding challenges and future directions for biodiversity monitoring using citizen science data

A Johnston, E Matechou… - Methods in Ecology and …, 2023 - Wiley Online Library
There is increasing availability and use of unstructured and semi‐structured citizen science
data in biodiversity research and conservation. This expansion of a rich source of 'big …

A comparison between Ensemble and MaxEnt species distribution modelling approaches for conservation: A case study with Egyptian medicinal plants

E Kaky, V Nolan, A Alatawi, F Gilbert - Ecological Informatics, 2020 - Elsevier
Understanding the relationship between the geographical distribution of taxa and their
environmental conditions is a key concept in ecology and conservation. The use of …

Joint species distribution modelling with the r‐package Hmsc

G Tikhonov, ØH Opedal, N Abrego… - Methods in ecology …, 2020 - Wiley Online Library
Abstract Joint Species Distribution Modelling (JSDM) is becoming an increasingly popular
statistical method for analysing data in community ecology. Hierarchical Modelling of …

Embracing mountain microbiome and ecosystem functions under global change

J Wang, A Hu, F Meng, W Zhao, Y Yang… - New …, 2022 - Wiley Online Library
Mountains are pivotal to maintaining habitat heterogeneity, global biodiversity, ecosystem
functions and services to humans. They have provided classic model natural systems for …

How to make more out of community data? A conceptual framework and its implementation as models and software

O Ovaskainen, G Tikhonov, A Norberg… - Ecology …, 2017 - Wiley Online Library
Community ecology aims to understand what factors determine the assembly and dynamics
of species assemblages at different spatiotemporal scales. To facilitate the integration …