Graph partitioning algorithms with biological connectivity decisions for neuron reconstruction in electron microscope volumes

B Hong, J Liu, L Shen, Q **e, J Yuan… - Expert Systems with …, 2023 - Elsevier
Neuron reconstruction algorithms used in electron microscope volumes have received
increasing attention in recent years. Most current methods are highly reliant on neuron …

Introducing the Boundary-Aware loss for deep image segmentation

MÔV Ngoc, Y Chen, N Boutry, J Chazalon… - British Machine Vision …, 2021 - hal.science
Most contemporary supervised image segmentation methods do not preserve the initial
topology of the given input (like the closeness of the contours). One can generally remark …

Gasp, a generalized framework for agglomerative clustering of signed graphs and its application to instance segmentation

A Bailoni, C Pape, N Hütsch, S Wolf… - Proceedings of the …, 2022 - openaccess.thecvf.com
We propose a theoretical framework that generalizes simple and fast algorithms for
hierarchical agglomerative clustering to weighted graphs with both attractive and repulsive …

Rotation-equivariant semantic instance segmentation on biomedical images

KB Bernander, J Lindblad, R Strand… - Annual Conference on …, 2022 - Springer
Advances in image segmentation techniques, brought by convolutional neural network
(CNN) architectures like U-Net, show promise for tasks such as automated cancer …

BuyTheDips: PathLoss for improved topology-preserving deep learning-based image segmentation

MOV Ngoc, Y Chen, N Boutry, J Fabrizio… - arxiv preprint arxiv …, 2022 - arxiv.org
Capturing the global topology of an image is essential for proposing an accurate
segmentation of its domain. However, most of existing segmentation methods do not …

GASP, a generalized framework for agglomerative clustering of signed graphs and its application to Instance Segmentation

A Bailoni, C Pape, N Hütsch, S Wolf, T Beier… - arxiv preprint arxiv …, 2019 - arxiv.org
We propose a theoretical framework that generalizes simple and fast algorithms for
hierarchical agglomerative clustering to weighted graphs with both attractive and repulsive …

Deep multiple affinity model for proposal-free single instance segmentation

IC Saidu, L Csató - International Journal of Computational …, 2024 - inderscienceonline.com
We improve on an existing instance segmentation model with a probabilistic extension to the
encoded neighbourhood branch model (Bailoni et al., 2020)-we call it multiple outputs …

Intra-and Inter-Cellular Awareness for 3D Neuron Tracking and Segmentation in Large-Scale Connectomics

H Zhai, J Liu, B Hong, J Liu, Q **e… - Medical Imaging with …, 2024 - openreview.net
Currently, most state-of-the-art pipelines for 3D micro-connectomic reconstruction deal with
neuron over-segmentation, agglomeration and subcellular compartment (nuclei …

[PDF][PDF] Introducing the Boundary-Aware loss for deep image segmentation

Y Chen, N Boutry, J Chazalon, E Carlinet, J Fabrizio… - lrde.epita.fr
Most contemporary supervised image segmentation methods do not preserve the initial
topology of the given input (like the closeness of the contours). One can generally remark …