Systems biology and biotechnology of Streptomyces species for the production of secondary metabolites

KS Hwang, HU Kim, P Charusanti, BØ Palsson… - Biotechnology …, 2014 - Elsevier
Streptomyces species continue to attract attention as a source of novel medicinal
compounds. Despite a long history of studies on these microorganisms, they still have many …

'Unknown'proteins and 'orphan'enzymes: the missing half of the engineering parts list–and how to find it

AD Hanson, A Pribat, JC Waller… - Biochemical …, 2010 - portlandpress.com
Like other forms of engineering, metabolic engineering requires knowledge of the
components (the 'parts list') of the target system. Lack of such knowledge impairs both …

[HTML][HTML] Metabolic modelling as a framework for metabolomics data integration and analysis

S Volkova, MRA Matos, M Mattanovich, I Marín de Mas - Metabolites, 2020 - mdpi.com
Metabolic networks are regulated to ensure the dynamic adaptation of biochemical reaction
fluxes to maintain cell homeostasis and optimal metabolic fitness in response to …

Synergy between 13C-metabolic flux analysis and flux balance analysis for understanding metabolic adaption to anaerobiosis in E. coli

X Chen, AP Alonso, DK Allen, JL Reed… - Metabolic …, 2011 - Elsevier
Genome-based Flux Balance Analysis (FBA) and steady-state isotopic-labeling-based
Metabolic Flux Analysis (MFA) are complimentary approaches to predicting and measuring …

Constraints-based genome-scale metabolic simulation for systems metabolic engineering

JM Park, TY Kim, SY Lee - Biotechnology advances, 2009 - Elsevier
Random mutagenesis and selection approaches used traditionally for the development of
industrial strains have largely been complemented by metabolic engineering, which allows …

The renaissance of continuous culture in the post-genomics age

AT Bull - Journal of Industrial Microbiology and Biotechnology, 2010 - academic.oup.com
The development of continuous culture techniques 60 years ago and the subsequent
formulation of theory and the diversification of experimental systems revolutionised …

Genome-scale reconstruction and in silico analysis of the Ralstonia eutropha H16 for polyhydroxyalkanoate synthesis, lithoautotrophic growth, and 2-methyl citric …

JM Park, TY Kim, SY Lee - BMC systems biology, 2011 - Springer
Background Ralstonia eutropha H16, found in both soil and water, is a Gram-negative
lithoautotrophic bacterium that can utillize CO 2 and H 2 as its sources of carbon and energy …

Reconstruction of a high‐quality metabolic model enables the identification of gene overexpression targets for enhanced antibiotic production in Streptomyces …

M Kim, J Sang Yi, J Kim, JN Kim, MW Kim… - Biotechnology …, 2014 - Wiley Online Library
Streptomycetes are industrially and pharmaceutically important bacteria that produce a
variety of secondary metabolites including antibiotics. Streptomycetes have a complex …

Improving baculovirus production at high cell density through manipulation of energy metabolism

N Carinhas, V Bernal, F Monteiro, MJT Carrondo… - Metabolic …, 2010 - Elsevier
The insect cells/baculovirus system is well recognized as a safe and suitable technology to
produce heterologous proteins, vaccines and vectors for gene therapy. Efficient and robust …

Accomplishments in genome‐scale in silico modeling for industrial and medical biotechnology

CB Milne, PJ Kim, JA Eddy… - Biotechnology Journal …, 2009 - Wiley Online Library
Driven by advancements in high‐throughput biological technologies and the growing
number of sequenced genomes, the construction of in silico models at the genome scale …