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From microbiome composition to functional engineering, one step at a time
Communities of microorganisms (microbiota) are present in all habitats on Earth and are
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …
[HTML][HTML] Kinetic models in industrial biotechnology–improving cell factory performance
An increasing number of industrial bioprocesses capitalize on living cells by using them as
cell factories that convert sugars into chemicals. These processes range from the production …
cell factories that convert sugars into chemicals. These processes range from the production …
[HTML][HTML] Lipidomics: new tools and applications
MR Wenk - Cell, 2010 - cell.com
Once viewed simply as a reservoir for carbon storage, lipids are no longer cast as
bystanders in the drama of biological systems. The emerging field of lipidomics is driven by …
bystanders in the drama of biological systems. The emerging field of lipidomics is driven by …
Pathway thermodynamics highlights kinetic obstacles in central metabolism
In metabolism research, thermodynamics is usually used to determine the directionality of a
reaction or the feasibility of a pathway. However, the relationship between thermodynamic …
reaction or the feasibility of a pathway. However, the relationship between thermodynamic …
Formulation, construction and analysis of kinetic models of metabolism: A review of modelling frameworks
Kinetic models are critical to predict the dynamic behaviour of metabolic networks.
Mechanistic kinetic models for large networks remain uncommon due to the difficulty of fitting …
Mechanistic kinetic models for large networks remain uncommon due to the difficulty of fitting …
Reconstructing kinetic models for dynamical studies of metabolism using generative adversarial networks
Kinetic models of metabolism relate metabolic fluxes, metabolite concentrations and enzyme
levels through mechanistic relations, rendering them essential for understanding, predicting …
levels through mechanistic relations, rendering them essential for understanding, predicting …
Cofactor engineering for more efficient production of chemicals and biofuels
M Wang, B Chen, Y Fang, T Tan - Biotechnology advances, 2017 - Elsevier
Cofactors are involved in numerous intracellular reactions and critically influence redox
balance and cellular metabolism. Cofactor engineering can support and promote the …
balance and cellular metabolism. Cofactor engineering can support and promote the …
A kinetic model of Escherichia coli core metabolism satisfying multiple sets of mutant flux data
In contrast to stoichiometric-based models, the development of large-scale kinetic models of
metabolism has been hindered by the challenge of identifying kinetic parameter values and …
metabolism has been hindered by the challenge of identifying kinetic parameter values and …
Strategies for microbial synthesis of high-value phytochemicals
Phytochemicals are of great pharmaceutical and agricultural importance, but often exhibit
low abundance in nature. Recent demonstrations of industrial-scale production of …
low abundance in nature. Recent demonstrations of industrial-scale production of …
Simulated design–build–test–learn cycles for consistent comparison of machine learning methods in metabolic engineering
Combinatorial pathway optimization is an important tool in metabolic flux optimization.
Simultaneous optimization of a large number of pathway genes often leads to combinatorial …
Simultaneous optimization of a large number of pathway genes often leads to combinatorial …