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Nanopore-based single-molecule investigation of cation effect on the i-motif structure
Z Wang, R Cui, L Liu, L Li, Z Li, X Liu… - The Journal of Physical …, 2024 - ACS Publications
The i-motif, a secondary structure of a four-helix formed by cytosine-rich DNA (i-DNA)
through C–C+ base pairing, is prevalent in human telomeres and promoters. This structure …
through C–C+ base pairing, is prevalent in human telomeres and promoters. This structure …
i-Motif folding intermediates with zero-nucleotide loops are trapped by 2′-fluoroarabinocytidine via F··· H and O··· H hydrogen bonds
G-quadruplex and i-motif nucleic acid structures are believed to fold through kinetic
partitioning mechanisms. Such mechanisms explain the structural heterogeneity of G …
partitioning mechanisms. Such mechanisms explain the structural heterogeneity of G …
Two opposing effects of monovalent cations on the stability of i-Motif structure
At acidic pH, cytosine-rich single-stranded DNA can be folded into a tetraplex structure
called i-motif (iM). In recent studies, the effect of monovalent cations on the stability of iM …
called i-motif (iM). In recent studies, the effect of monovalent cations on the stability of iM …
A Bright and Ionizable Cytosine Mimic for i-Motif Structures
A Karimi, K Wang, K Basran, W Copp… - Bioconjugate …, 2023 - ACS Publications
A new fluorescent cytosine analog “tsC” containing a trans-stilbene moiety was synthesized
and incorporated into hemiprotonated base pairs that comprise i-motif structures. Unlike …
and incorporated into hemiprotonated base pairs that comprise i-motif structures. Unlike …
Early Folding Dynamics of i-Motif DNA Revealed by pH-Jump Time-Resolved X-ray Solution Scattering
The i-motif is a pH-responsive cytosine-rich oligonucleotide sequence that forms, under
acidic conditions, a quadruplex structure. This tunable structural switching has made the i …
acidic conditions, a quadruplex structure. This tunable structural switching has made the i …
I-motif sensor for the fluorometric detection of Monkeypox
TA Asa, YJ Seo - Analyst, 2024 - pubs.rsc.org
In this study, we developed an isothermal fluorometric diagnostic method for DNA virus-
generating disorders such as Mpox. Our results showed that the release of a large number …
generating disorders such as Mpox. Our results showed that the release of a large number …
Structural Dynamics of Biological Macromolecules Revealed by Time-Resolved X-Ray Scattering and Molecular Dynamics Simulations
AM Chan - 2024 - search.proquest.com
The three-dimensional structure of a biological macromolecule (BMM) determines its
biological function. Protein folding has been at the forefront of biophysical research for …
biological function. Protein folding has been at the forefront of biophysical research for …
Assessing the Impact of Buffer Salt Choice on the Formation of DNA I-Motifs
C West - 2023 - search.proquest.com
I-motifs are intercalated cytosine quadruplexes discovered in 1993, but they weren't shown
to exist in the cell nucleus until 2018. While their biological role has yet to be fully elucidated …
to exist in the cell nucleus until 2018. While their biological role has yet to be fully elucidated …