Nanopore-based single-molecule investigation of cation effect on the i-motif structure

Z Wang, R Cui, L Liu, L Li, Z Li, X Liu… - The Journal of Physical …, 2024 - ACS Publications
The i-motif, a secondary structure of a four-helix formed by cytosine-rich DNA (i-DNA)
through C–C+ base pairing, is prevalent in human telomeres and promoters. This structure …

Two opposing effects of monovalent cations on the stability of i-Motif structure

SE Kim, SC Hong - The Journal of Physical Chemistry B, 2023 - ACS Publications
At acidic pH, cytosine-rich single-stranded DNA can be folded into a tetraplex structure
called i-motif (iM). In recent studies, the effect of monovalent cations on the stability of iM …

A Bright and Ionizable Cytosine Mimic for i-Motif Structures

A Karimi, K Wang, K Basran, W Copp… - Bioconjugate …, 2023 - ACS Publications
A new fluorescent cytosine analog “tsC” containing a trans-stilbene moiety was synthesized
and incorporated into hemiprotonated base pairs that comprise i-motif structures. Unlike …

Early Folding Dynamics of i-Motif DNA Revealed by pH-Jump Time-Resolved X-ray Solution Scattering

AM Chan, SB Ebrahimi, D Samanta… - Journal of the …, 2024 - ACS Publications
The i-motif is a pH-responsive cytosine-rich oligonucleotide sequence that forms, under
acidic conditions, a quadruplex structure. This tunable structural switching has made the i …

I-motif sensor for the fluorometric detection of Monkeypox

TA Asa, YJ Seo - Analyst, 2024 - pubs.rsc.org
In this study, we developed an isothermal fluorometric diagnostic method for DNA virus-
generating disorders such as Mpox. Our results showed that the release of a large number …

Structural Dynamics of Biological Macromolecules Revealed by Time-Resolved X-Ray Scattering and Molecular Dynamics Simulations

AM Chan - 2024 - search.proquest.com
The three-dimensional structure of a biological macromolecule (BMM) determines its
biological function. Protein folding has been at the forefront of biophysical research for …

Assessing the Impact of Buffer Salt Choice on the Formation of DNA I-Motifs

C West - 2023 - search.proquest.com
I-motifs are intercalated cytosine quadruplexes discovered in 1993, but they weren't shown
to exist in the cell nucleus until 2018. While their biological role has yet to be fully elucidated …