Simultaneously modeling hybridization and the multispecies coalescent is becoming
increasingly common, and inference of species networks in this context is now implemented …

Phylogenetic networks are special graphs that generalize phylogenetic trees to allow for
modeling of non-treelike evolutionary histories. The ability to sequence multiple genetic …

The Robinson–Foulds (RF) distance is the most popular method of evaluating the
dissimilarity between phylogenetic trees. In this paper, we define and explore in detail …

The assessment of phylogenetic network reconstruction methods requires the ability to
compare phylogenetic networks. This is the first in a series of papers devoted to the analysis …

Phylogenetic networks generalize evolutionary trees, and are commonly used to represent
evolutionary histories of species that undergo reticulate evolutionary processes such as …

Phylogenetic networks generalize phylogenetic trees in order to model reticulation events.
Although the comparison of phylogenetic trees is well studied, and there are multiple ways …

Phylogenetic networks are leaf-labeled, rooted, acyclic, and directed graphs that are used to
model reticulate evolutionary histories. Several measures for quantifying the topological …

A phylogenetic network is a rooted acyclic digraph with vertices corresponding to taxa. Let X
denote a set of vertices containing the root, the leaves, and all vertices of outdegree 1 …

Phylogenetic networks are a generalization of phylogenetic trees that are used to represent
reticulate evolution. Unrooted phylogenetic networks form a special class of such networks …

Phylogenetic networks have now joined phylogenetic trees in the center of phylogenetics
research. Like phylogenetic trees, such networks canonically induce collections of …