Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

Current and emerging trends in techniques for plant pathogen detection

M Venbrux, S Crauwels, H Rediers - Frontiers in Plant Science, 2023 - frontiersin.org
Plant pathogenic microorganisms cause substantial yield losses in several economically
important crops, resulting in economic and social adversity. The spread of such plant …

A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

A Hakimzadeh, A Abdala Asbun… - Molecular Ecology …, 2024 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …

Global diversity and distribution of nitrogen-fixing bacteria in the soil

SK Sepp, M Vasar, J Davison, J Oja, S Anslan… - Frontiers in plant …, 2023 - frontiersin.org
Our knowledge of microbial biogeography has advanced in recent years, yet we lack
knowledge of the global diversity of some important functional groups. Here, we used …

Do commercial arbuscular mycorrhizal inoculants contain the species that they claim?

T Vahter, EM Lillipuu, J Oja, M Öpik, M Vasar, I Hiiesalu - Mycorrhiza, 2023 - Springer
The use of arbuscular mycorrhizal (AM) fungal inoculants as a means to promote plant
growth is gaining momentum worldwide. Although there is an increasing number of …

Global soil microbiomes: A new frontline of biome‐ecology research

M Vasar, J Davison, SK Sepp, L Mucina… - Global Ecology and …, 2022 - Wiley Online Library
Aim Organisms on our planet form spatially congruent and functionally distinct communities,
which at large geographical scales are called “biomes”. Understanding their pattern and …

Root herbivory reduces species richness and alters community structure of root-colonising arbuscular mycorrhizal fungi

A Frew - Soil Biology and Biochemistry, 2022 - Elsevier
Belowground insect herbivory is an important interaction that can shape ecological
communities above-and belowground. A key component of belowground ecosystems are …

Cover crops modulate the response of arbuscular mycorrhizal fungi to water supply: a Field study in corn

M Tosi, CM Ogilvie, FN Spagnoletti, S Fournier… - Plants, 2023 - mdpi.com
Cover crops (CCs) were found to improve soil health by increasing plant diversity and
ground cover. They may also improve water supply for cash crops by reducing evaporation …

Global taxonomic and phylogenetic assembly of AM fungi

M Vasar, J Davison, SK Sepp, J Oja, S Al-Quraishy… - Mycorrhiza, 2022 - Springer
Arbuscular mycorrhizal (AM) fungi are a ubiquitous group of plant symbionts, yet processes
underlying their global assembly—in particular the roles of dispersal limitation and historical …

Legacy effects of temporary grassland in annual crop rotation on soil ecosystem services

K Hoeffner, A Beylich, A Chabbi, D Cluzeau… - Science of The Total …, 2021 - Elsevier
The introduction of temporary grassland into an annual crop rotation is recognized to
improve soil ecosystem services, and resulting legacies can be beneficial for the following …