Background Clinical interpretation of genetic variants in the context of the patient's
phenotype is becoming the largest component of cost and time expenditure for genome …

The de Bruijn graph is a key data structure in modern computational genomics, and
construction of its compacted variant resides upstream of many genomic analyses. As the …

Background Many metagenome analysis tools are presently available to classify sequences
and profile environmental samples. In particular, taxonomic profiling and binning methods …

This paper presents the implementation of a map** algorithm on a new Processing-in-
Memory (PIM) architecture developed by UPMEM Company. UPMEM's solution consists in …

Abstract The advent of Solid State Drives (SSDs) stimulated a lot of research to investigate
and exploit to the extent possible the potentials of the new drive. The focus of this work is on …

The longest flow path is widely used for studying hydrology. Traditionally, both or either of
upstream and downstream flow length rasters are required to calculate the longest flow path …

Isobaric labeling-based relative quantification techniques such as iTRAQ and TMT were
introduced 15 years ago and are now nearly ubiquitous in shotgun proteomics labs around …

User support personnel, systems engineers, and administrators of HPC installations need to
be aware of log and telemetry information from different systems in order to perform routine …

Rapid developments in the throughput and affordability of modern genome-sequencing
technologies have made the generation of billions of sequencing reads from biological …

Untitled Page 1 Page 2 ii OFFICIAL OFFICIAL Table of Contents Table of Contents .............................................................................................................................
ii List of Figures and Tables ............................................................................................................... iv …