Sequence, chromatin and evolution of satellite DNA

J Thakur, J Packiaraj, S Henikoff - International journal of molecular …, 2021 - mdpi.com
Satellite DNA consists of abundant tandem repeats that play important roles in cellular
processes, including chromosome segregation, genome organization and chromosome end …

The structure, function, and evolution of plant centromeres

M Naish, IR Henderson - Genome Research, 2024 - genome.cshlp.org
Centromeres are essential regions of eukaryotic chromosomes responsible for the formation
of kinetochore complexes, which connect to spindle microtubules during cell division …

The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding

X Shi, S Cao, X Wang, S Huang, Y Wang… - Horticulture …, 2023 - academic.oup.com
Grapevine is one of the most economically important crops worldwide. However, the
previous versions of the grapevine reference genome tipically consist of thousands of …

Significantly improving the quality of genome assemblies through curation

K Howe, W Chow, J Collins, S Pelan, DL Pointon… - …, 2021 - academic.oup.com
Genome sequence assemblies provide the basis for our understanding of biology.
Generating error-free assemblies is therefore the ultimate, but sadly still unachieved goal of …

The genetic and epigenetic landscape of the Arabidopsis centromeres

M Naish, M Alonge, P Wlodzimierz, AJ Tock… - Science, 2021 - science.org
INTRODUCTION The centromeres of eukaryotic chromosomes assemble the multiprotein
kinetochore complex and thereby position attachment to the spindle microtubules, allowing …

Cycles of satellite and transposon evolution in Arabidopsis centromeres

P Wlodzimierz, FA Rabanal, R Burns, M Naish… - Nature, 2023 - nature.com
Centromeres are critical for cell division, loading CENH3 or CENPA histone variant
nucleosomes, directing kinetochore formation and allowing chromosome segregation …

3D genomics across the tree of life reveals condensin II as a determinant of architecture type

C Hoencamp, O Dudchenko, AMO Elbatsh… - Science, 2021 - science.org
We investigated genome folding across the eukaryotic tree of life. We find two types of three-
dimensional (3D) genome architectures at the chromosome scale. Each type appears and …

Deeply conserved synteny and the evolution of metazoan chromosomes

O Simakov, J Bredeson, K Berkoff, F Marletaz… - Science …, 2022 - science.org
Animal genomes show networks of deeply conserved gene linkages whose phylogenetic
scope and chromosomal context remain unclear. Here, we report chromosome-scale …

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

N Daccord, JM Celton, G Linsmith, C Becker… - Nature …, 2017 - nature.com
Using the latest sequencing and optical map** technologies, we have produced a high-
quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat …

A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour

L Zhang, J Hu, X Han, J Li, Y Gao, CM Richards… - Nature …, 2019 - nature.com
A complete and accurate genome sequence provides a fundamental tool for functional
genomics and DNA-informed breeding. Here, we assemble a high-quality genome (contig …