Wound healing: a cellular perspective
Wound healing is one of the most complex processes in the human body. It involves the
spatial and temporal synchronization of a variety of cell types with distinct roles in the …
spatial and temporal synchronization of a variety of cell types with distinct roles in the …
Clinical metagenomic next-generation sequencing for pathogen detection
Nearly all infectious agents contain DNA or RNA genomes, making sequencing an attractive
approach for pathogen detection. The cost of high-throughput or next-generation …
approach for pathogen detection. The cost of high-throughput or next-generation …
Unicycler: resolving bacterial genome assemblies from short and long sequencing reads
The Illumina DNA sequencing platform generates accurate but short reads, which can be
used to produce accurate but fragmented genome assemblies. Pacific Biosciences and …
used to produce accurate but fragmented genome assemblies. Pacific Biosciences and …
Shotgun metagenomics, from sampling to analysis
Diverse microbial communities of bacteria, archaea, viruses and single-celled eukaryotes
have crucial roles in the environment and in human health. However, microbes are …
have crucial roles in the environment and in human health. However, microbes are …
[HTML][HTML] The short chain fatty acid butyrate imprints an antimicrobial program in macrophages
Host microbial cross-talk is essential to maintain intestinal homeostasis. However,
maladaptation of this response through microbial dysbiosis or defective host defense toward …
maladaptation of this response through microbial dysbiosis or defective host defense toward …
Distinct fibroblast subsets drive inflammation and damage in arthritis
The identification of lymphocyte subsets with non-overlap** effector functions has been
pivotal to the development of targeted therapies in immune-mediated inflammatory diseases …
pivotal to the development of targeted therapies in immune-mediated inflammatory diseases …
Identification of the human skeletal stem cell
Stem cell regulation and hierarchical organization of human skeletal progenitors remain
largely unexplored. Here, we report the isolation of a self-renewing and multipotent human …
largely unexplored. Here, we report the isolation of a self-renewing and multipotent human …
Profiling cell type abundance and expression in bulk tissues with CIBERSORTx
CIBERSORTx is a suite of machine learning tools for the assessment of cellular abundance
and cell type-specific gene expression patterns from bulk tissue transcriptome profiles. With …
and cell type-specific gene expression patterns from bulk tissue transcriptome profiles. With …
Benchmarking metagenomics tools for taxonomic classification
HY Simon, KJ Siddle, DJ Park, PC Sabeti - Cell, 2019 - cell.com
Metagenomic sequencing is revolutionizing the detection and characterization of microbial
species, and a wide variety of software tools are available to perform taxonomic …
species, and a wide variety of software tools are available to perform taxonomic …
Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations
Mutations, the fuel of evolution, are first manifested as rare DNA changes within a population
of cells. Although next-generation sequencing (NGS) technologies have revolutionized the …
of cells. Although next-generation sequencing (NGS) technologies have revolutionized the …