Graph representation learning in bioinformatics: trends, methods and applications

HC Yi, ZH You, DS Huang… - Briefings in …, 2022 - academic.oup.com
Graph is a natural data structure for describing complex systems, which contains a set of
objects and relationships. Ubiquitous real-life biomedical problems can be modeled as …

Recent advances in network-based methods for disease gene prediction

SK Ata, M Wu, Y Fang, L Ou-Yang… - Briefings in …, 2021 - academic.oup.com
Disease–gene association through genome-wide association study (GWAS) is an arduous
task for researchers. Investigating single nucleotide polymorphisms that correlate with …

[BUCH][B] Deep learning on graphs

Y Ma, J Tang - 2021 - books.google.com
Deep learning on graphs has become one of the hottest topics in machine learning. The
book consists of four parts to best accommodate our readers with diverse backgrounds and …

Representation learning for attributed multiplex heterogeneous network

Y Cen, X Zou, J Zhang, H Yang, J Zhou… - Proceedings of the 25th …, 2019 - dl.acm.org
Network embedding (or graph embedding) has been widely used in many real-world
applications. However, existing methods mainly focus on networks with single-typed …

Multi-view attributed graph clustering

Z Lin, Z Kang, L Zhang, L Tian - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
Multi-view graph clustering has been intensively investigated during the past years.
However, existing methods are still limited in two main aspects. On the one hand, most of …

Hdmi: High-order deep multiplex infomax

B **g, C Park, H Tong - Proceedings of the Web Conference 2021, 2021 - dl.acm.org
Networks have been widely used to represent the relations between objects such as
academic networks and social networks, and learning embedding for networks has thus …

Unsupervised attributed multiplex network embedding

C Park, D Kim, J Han, H Yu - Proceedings of the AAAI conference on …, 2020 - ojs.aaai.org
Nodes in a multiplex network are connected by multiple types of relations. However, most
existing network embedding methods assume that only a single type of relation exists …

One2multi graph autoencoder for multi-view graph clustering

S Fan, X Wang, C Shi, E Lu, K Lin, B Wang - proceedings of the web …, 2020 - dl.acm.org
Multi-view graph clustering, which seeks a partition of the graph with multiple views that
often provide more comprehensive yet complex information, has received considerable …

[PDF][PDF] Graph Filter-based Multi-view Attributed Graph Clustering.

Z Lin, Z Kang - IJCAI, 2021 - ijcai.org
Graph clustering has become an important research topic due to the proliferation of graph
data. However, existing methods suffer from two major drawbacks. On the one hand, most …

Graph communal contrastive learning

B Li, B **g, H Tong - Proceedings of the ACM web conference 2022, 2022 - dl.acm.org
Graph representation learning is crucial for many real-world applications (eg social relation
analysis). A fundamental problem for graph representation learning is how to effectively …