Control of tissue development by morphogens

A Kicheva, J Briscoe - Annual review of cell and developmental …, 2023 - annualreviews.org
Intercellular signaling molecules, known as morphogens, act at a long range in develo**
tissues to provide spatial information and control properties such as cell fate and tissue …

Self-organization in pattern formation

F Schweisguth, F Corson - Developmental cell, 2019 - cell.com
Self-organization is pervasive in development, from symmetry breaking in the early embryo
to tissue patterning and morphogenesis. For a few model systems, the underlying molecular …

Gene expression cartography

M Nitzan, N Karaiskos, N Friedman, N Rajewsky - Nature, 2019 - nature.com
Multiplexed RNA sequencing in individual cells is transforming basic and clinical life
sciences,,–. Often, however, tissues must first be dissociated, and crucial information about …

Escherichia coli chemotaxis is information limited

HH Mattingly, K Kamino, BB Machta, T Emonet - Nature physics, 2021 - nature.com
Organisms acquire and use information from their environment to guide their behaviour.
However, it is unclear whether this information quantitatively limits their performance at …

[HTML][HTML] An Integrated World Modeling Theory (IWMT) of consciousness: combining integrated information and global neuronal workspace theories with the free …

A Safron - Frontiers in artificial intelligence, 2020 - frontiersin.org
The Free Energy Principle and Active Inference Framework (FEP-AI) begins with the
understanding that thermodynamically-open systems must regulate environmental …

Precise and scalable self-organization in mammalian pseudo-embryos

M Merle, L Friedman, C Chureau… - Nature Structural & …, 2024 - nature.com
Gene expression is inherently noisy, posing a challenge to understanding how precise and
reproducible patterns of gene expression emerge in mammals. Here we investigate this …

Limits on inferring T cell specificity from partial information

J Henderson, Y Nagano, M Milighetti… - Proceedings of the …, 2024 - pnas.org
A key challenge in molecular biology is to decipher the map** of protein sequence to
function. To perform this map** requires the identification of sequence features most …

Patterning principles of morphogen gradients

MF Simsek, EM Özbudak - Open Biology, 2022 - royalsocietypublishing.org
Metazoan embryos develop from a single cell into three-dimensional structured organisms
while groups of genetically identical cells attain specialized identities. Cells of the …

The many bits of positional information

G Tkačik, T Gregor - Development, 2021 - journals.biologists.com
Half a century after Lewis Wolpert's seminal conceptual advance on how cellular fates
distribute in space, we provide a brief historical perspective on how the concept of positional …

Multimodal transcriptional control of pattern formation in embryonic development

NC Lammers, V Galstyan, A Reimer… - Proceedings of the …, 2020 - National Acad Sciences
Predicting how interactions between transcription factors and regulatory DNA sequence
dictate rates of transcription and, ultimately, drive developmental outcomes remains an open …