Reconstructing organisms in silico: genome-scale models and their emerging applications
Escherichia coli is considered to be the best-known microorganism given the large number
of published studies detailing its genes, its genome and the biochemical functions of its …
of published studies detailing its genes, its genome and the biochemical functions of its …
Network medicine: a network-based approach to human disease
Given the functional interdependencies between the molecular components in a human cell,
a disease is rarely a consequence of an abnormality in a single gene, but reflects the …
a disease is rarely a consequence of an abnormality in a single gene, but reflects the …
Controllability of complex networks
The ultimate proof of our understanding of natural or technological systems is reflected in
our ability to control them. Although control theory offers mathematical tools for steering …
our ability to control them. Although control theory offers mathematical tools for steering …
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …
methods and in rational drug design, the increase in approved drugs in the past decade did …
Network pharmacology: the next paradigm in drug discovery
AL Hopkins - Nature chemical biology, 2008 - nature.com
The dominant paradigm in drug discovery is the concept of designing maximally selective
ligands to act on individual drug targets. However, many effective drugs act via modulation …
ligands to act on individual drug targets. However, many effective drugs act via modulation …
Data based identification and prediction of nonlinear and complex dynamical systems
The problem of reconstructing nonlinear and complex dynamical systems from measured
data or time series is central to many scientific disciplines including physical, biological …
data or time series is central to many scientific disciplines including physical, biological …
Analyzing and modeling real-world phenomena with complex networks: a survey of applications
The success of new scientific areas can be assessed by their potential in contributing to new
theoretical approaches and in applications to real-world problems. Complex networks have …
theoretical approaches and in applications to real-world problems. Complex networks have …
[HTML][HTML] Realistic control of network dynamics
The control of complex networks is of paramount importance in areas as diverse as
ecosystem management, emergency response and cell reprogramming. A fundamental …
ecosystem management, emergency response and cell reprogramming. A fundamental …
Basic and applied uses of genome‐scale metabolic network reconstructions of Escherichia coli
The genome‐scale model (GEM) of metabolism in the bacterium Escherichia coli K‐12 has
been in development for over a decade and is now in wide use. GEM‐enabled studies of E …
been in development for over a decade and is now in wide use. GEM‐enabled studies of E …
Emergent cooperation in microbial metabolism
EH Wintermute, PA Silver - Molecular systems biology, 2010 - embopress.org
Mixed microbial communities exhibit emergent biochemical properties not found in clonal
monocultures. We report a new type of synthetic genetic interaction, synthetic mutualism in …
monocultures. We report a new type of synthetic genetic interaction, synthetic mutualism in …