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Classification and nomenclature of CRISPR-Cas systems: where from here?
As befits an immune mechanism, CRISPR-Cas systems are highly variable with respect to
Cas protein sequences, gene composition, and organization of the genomic loci. Optimal …
Cas protein sequences, gene composition, and organization of the genomic loci. Optimal …
Revenge of the phages: defeating bacterial defences
JE Samson, AH Magadán, M Sabri… - Nature Reviews …, 2013 - nature.com
Bacteria and their viral predators (bacteriophages) are locked in a constant battle. In order to
proliferate in phage-rich environments, bacteria have an impressive arsenal of defence …
proliferate in phage-rich environments, bacteria have an impressive arsenal of defence …
DISARM is a widespread bacterial defence system with broad anti-phage activities
The evolutionary pressure imposed by phage predation on bacteria and archaea has
resulted in the development of effective anti-phage defence mechanisms, including …
resulted in the development of effective anti-phage defence mechanisms, including …
REBASE—a database for DNA restriction and modification: enzymes, genes and genomes
RJ Roberts, T Vincze, J Posfai… - Nucleic acids research, 2015 - academic.oup.com
REBASE is a comprehensive and fully curated database of information about the
components of restriction-modification (RM) systems. It contains fully referenced information …
components of restriction-modification (RM) systems. It contains fully referenced information …
Evolutionary genomics of defense systems in archaea and bacteria
Evolution of bacteria and archaea involves an incessant arms race against an enormous
diversity of genetic parasites. Accordingly, a substantial fraction of the genes in most …
diversity of genetic parasites. Accordingly, a substantial fraction of the genes in most …
Diverse functions of restriction-modification systems in addition to cellular defense
Restriction-modification (RM) systems are ubiquitous and are often considered primitive
immune systems in bacteria. Their diversity and prevalence across the prokaryotic kingdom …
immune systems in bacteria. Their diversity and prevalence across the prokaryotic kingdom …
[HTML][HTML] Evolutionary dynamics between phages and bacteria as a possible approach for designing effective phage therapies against antibiotic-resistant bacteria
With the increasing global threat of antibiotic resistance, there is an urgent need to develop
new effective therapies to tackle antibiotic-resistant bacterial infections. Bacteriophage …
new effective therapies to tackle antibiotic-resistant bacterial infections. Bacteriophage …
The epigenomic landscape of prokaryotes
DNA methylation acts in concert with restriction enzymes to protect the integrity of
prokaryotic genomes. Studies in a limited number of organisms suggest that methylation …
prokaryotic genomes. Studies in a limited number of organisms suggest that methylation …
Evolutionary ecology of prokaryotic immune mechanisms
Bacteria have a range of distinct immune strategies that provide protection against
bacteriophage (phage) infections. While much has been learned about the mechanism of …
bacteriophage (phage) infections. While much has been learned about the mechanism of …
Comparative genomics of defense systems in archaea and bacteria
Our knowledge of prokaryotic defense systems has vastly expanded as the result of
comparative genomic analysis, followed by experimental validation. This expansion is both …
comparative genomic analysis, followed by experimental validation. This expansion is both …