Shotgun metagenomics, from sampling to analysis
Diverse microbial communities of bacteria, archaea, viruses and single-celled eukaryotes
have crucial roles in the environment and in human health. However, microbes are …
have crucial roles in the environment and in human health. However, microbes are …
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
The number of microbial genomes sequenced each year is expanding rapidly, in part due to
genome-resolved metagenomic studies that routinely recover hundreds of draft-quality …
genome-resolved metagenomic studies that routinely recover hundreds of draft-quality …
Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes
J Alneberg, CMG Karlsson, AM Divne, C Bergin… - Microbiome, 2018 - Springer
Background Prokaryotes dominate the biosphere and regulate biogeochemical processes
essential to all life. Yet, our knowledge about their biology is for the most part limited to the …
essential to all life. Yet, our knowledge about their biology is for the most part limited to the …
Consumer safety considerations of skin and oral microbiome perturbation
Microbiomes associated with human skin and the oral cavity are uniquely exposed to
personal care regimes. Changes in the composition and activities of the microbial …
personal care regimes. Changes in the composition and activities of the microbial …
Specific metagenomic asset drives the spontaneous fermentation of Italian sausages
Metagenomics is a powerful tool to study and understand the microbial dynamics that occur
during food fermentation and allows to close the link between microbial diversity and final …
during food fermentation and allows to close the link between microbial diversity and final …
Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing
Microbial communities in many environments include distinct lineages of closely related
organisms which have proved challenging to separate in metagenomic assembly …
organisms which have proved challenging to separate in metagenomic assembly …
Resources and tools for the high-throughput, multi-omic study of intestinal microbiota
The human gut microbiome impacts several aspects of human health and disease, including
digestion, drug metabolism and the propensity to develop various inflammatory …
digestion, drug metabolism and the propensity to develop various inflammatory …
dRep: a tool for fast and accurate genome de-replication that enables tracking of microbial genotypes and improved genome recovery from metagenomes
The number of microbial genomes sequenced each year is expanding rapidly, in part due to
genome-resolved metagenomic studies that routinely recover hundreds of draft-quality …
genome-resolved metagenomic studies that routinely recover hundreds of draft-quality …