Multiscale simulation of DNA

PD Dans, J Walther, H Gómez, M Orozco - Current opinion in structural …, 2016 - Elsevier
Highlights•We describe the most recent methods to study DNA from electrons to
chromosomes.•Methods were classified as: electronic, atomistic, coarse grained, and …

Endogenous polyamine function—the RNA perspective

HL Lightfoot, J Hall - Nucleic acids research, 2014 - academic.oup.com
Recent progress with techniques for monitoring RNA structure in cells such as 'DMS-
Seq'and 'Structure-Seq'suggests that a new era of RNA structure-function exploration is on …

Computational chemistry and molecular modelling basics

The use of computers for predicting the structures and properties of biomolecules has
closely paralleled computer development since the 1950s, and has been one of the core …

Exploiting hydrogen bonding interactions to probe smaller linear and cyclic diamines binding to G-quadruplexes: a DFT and molecular dynamics study

MK Si, A Sen, B Ganguly - Physical Chemistry Chemical Physics, 2017 - pubs.rsc.org
G-quadruplexes are formed by the association of four guanine bases through Hoogsteen
hydrogen bonding in guanine-rich sequences of DNA and exist in the telomere as well as in …

Molecular modelling of nucleic acids

H Gómez, J Walther, L Darré, I Ivani, PD Dans… - 2017 - books.rsc.org
Nucleic acids are flexible and highly charged polymers whose structure is defined by the
balance between opposite forces: strong phosphate–phosphate electrostatic repulsions …

Lithographic patterning of polymeric media for biotechnology applications

RP Deschner - 2013 - repositories.lib.utexas.edu
Lithographic patterning has heavily utilized in the semiconductor industry for its ability to
pattern vast numbers of complex shapes down to the nanometer scale. However, only …

[PDF][PDF] Molecular Modelling of Nucleic Acids

L DARRÉ, I IVANI, PD DANS, M OROZCO - researchgate.net
Nucleic acids are flexible and highly charged polymers whose structure is defined by the
balance between opposite forces: strong phosphate–phosphate electrostatic repulsions …