A review of wheat diseases—a field perspective

M Figueroa, KE Hammond‐Kosack… - Molecular plant …, 2018 - Wiley Online Library
Wheat is one of the primary staple foods throughout the planet. Significant yield gains in
wheat production over the past 40 years have resulted in a steady balance of supply versus …

PomBase: a Global Core Biodata Resource—growth, collaboration, and sustainability

KM Rutherford, M Lera-Ramírez, V Wood - Genetics, 2024 - academic.oup.com
Abstract PomBase (https://www. pombase. org), the model organism database (MOD) for
fission yeast, was recently awarded Global Core Biodata Resource (GCBR) status by the …

Ensembl Genomes 2020—enabling non-vertebrate genomic research

KL Howe, B Contreras-Moreira, N De Silva… - Nucleic acids …, 2020 - academic.oup.com
Abstract Ensembl Genomes (http://www. ensemblgenomes. org) is an integrating resource
for genome-scale data from non-vertebrate species, complementing the resources for …

PHI-base: the pathogen–host interactions database

M Urban, A Cuzick, J Seager, V Wood… - Nucleic acids …, 2020 - academic.oup.com
The pathogen–host interactions database (PHI-base) is available at www. phi-base. org. PHI-
base contains expertly curated molecular and biological information on genes proven to …

PHI-base in 2022: a multi-species phenotype database for pathogen–host interactions

M Urban, A Cuzick, J Seager, V Wood… - Nucleic Acids …, 2022 - academic.oup.com
Abstract Since 2005, the Pathogen–Host Interactions Database (PHI-base) has manually
curated experimentally verified pathogenicity, virulence and effector genes from fungal …

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

PJ Kersey, JE Allen, A Allot, M Barba… - Nucleic acids …, 2018 - academic.oup.com
Abstract Ensembl Genomes (http://www. ensemblgenomes. org) is an integrating resource
for genome-scale data from non-vertebrate species, complementing the resources for …

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

J Sperschneider, PN Dodds… - Molecular plant …, 2018 - Wiley Online Library
Plant‐pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …

Single-cell RNA sequencing reveals size-dependent effects of polystyrene microplastics on immune and secretory cell populations from zebrafish intestines

W Gu, S Liu, L Chen, Y Liu, C Gu… - … science & technology, 2020 - ACS Publications
Microplastics (MPs) as widespread contamination pose a high risk for aquatic organisms.
However, the current understanding of MP toxicity is based on cell population-averaged …

Coagulase-negative staphylococci pathogenomics

X Argemi, Y Hansmann, K Prola, G Prévost - International journal of …, 2019 - mdpi.com
Coagulase-negative Staphylococci (CoNS) are skin commensal bacteria. Besides their role
in maintaining homeostasis, CoNS have emerged as major pathogens in nosocomial …

Breast cancer in postmenopausal women is associated with an altered gut metagenome

J Zhu, M Liao, Z Yao, W Liang, Q Li, J Liu, H Yang, Y Ji… - Microbiome, 2018 - Springer
Background Increasing evidence suggests that gut microbiota play a role in the
pathogenesis of breast cancer. The composition and functional capacity of gut microbiota …