[HTML][HTML] Switch-independent 3A: an epigenetic regulator in cancer with new implications for pulmonary arterial hypertension

K Jankowski, V Jagana, M Bisserier, L Hadri - Biomedicines, 2023 - mdpi.com
Epigenetic mechanisms, including DNA methylation, histone modifications, and non-coding
RNA, play a crucial role in the regulation of gene expression and are pivotal in biological …

Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex

S Dong, H Li, M Wang, N Rasheed, B Zou, X Gao… - Cell Research, 2023 - nature.com
In Saccharomyces cerevisiae, cryptic transcription at the coding region is prevented by the
activity of Sin3 histone deacetylase (HDAC) complex Rpd3S, which is carried by the …

Histone acetylation and deacetylation–Mechanistic insights from structural biology

AB Patel, Y He, I Radhakrishnan - Gene, 2024 - Elsevier
Histones are subject to a diverse array of post-translational modifications. Among them,
lysine acetylation is not only the most pervasive and dynamic modification but also highly …

Co-translational assembly pathways of nuclear multiprotein complexes involved in the regulation of gene transcription

A Bernardini, L Tora - Journal of Molecular Biology, 2024 - Elsevier
Most factors that regulate gene transcription in eukaryotic cells are multimeric, often large,
protein complexes. The understanding of the biogenesis pathways of such large and …

Structure of the complete Saccharomyces cerevisiae Rpd3S-nucleosome complex

JW Markert, SM Vos, L Farnung - Nature Communications, 2023 - nature.com
Acetylation of histones is a key post-translational modification that guides gene expression
regulation. In yeast, the class I histone deacetylase containing Rpd3S complex plays a …

Structures and dynamics of Rpd3S complex bound to nucleosome

C Wang, C Chu, Z Guo, X Zhan - Science Advances, 2024 - science.org
The Rpd3S complex plays a pivotal role in facilitating local histone deacetylation in the
transcribed regions to suppress intragenic transcription initiation. Here, we present the cryo …

Histone deacetylation and cytosine methylation compartmentalize heterochromatic regions in the genome organization of Neurospora crassa

AW Scadden, AS Graybill, C Hull-Crew… - Proceedings of the …, 2023 - pnas.org
Chromosomes must correctly fold in eukaryotic nuclei for proper genome function.
Eukaryotic organisms hierarchically organize their genomes, including in the fungus …

Structure of the complete S. cerevisiae Rpd3S-nucleosome complex

JW Markert, SM Vos, L Farnung - bioRxiv, 2023 - biorxiv.org
Acetylation of histones is a key post-translational modification that guides gene expression
regulation. In yeast, the class I histone deacetylase containing Rpd3S complex plays a …

[HTML][HTML] HDAC1: An Essential and Conserved Member of the Diverse Zn2+-Dependent HDAC Family Driven by Divergent Selection Pressure

JF Yang, LR Shi, KC Wang, LL Huang… - International Journal of …, 2023 - mdpi.com
Zn2+-dependent histone deacetylases (HDACs) are enzymes that regulate gene expression
by removing acetyl groups from histone proteins. These enzymes are essential in all living …

A missense mutation in the Sin3 subunit of Rpd3 histone deacetylase complex bypasses the requirement for FNG1 in wheat scab fungus

X Huai-jian, J Ruo-xuan, F **an-hui, W Qin-hu… - Journal of Integrative …, 2024 - Elsevier
The Rpd3 histone deacetylase complex is a multiple-subunit complex that mediates the
regulation of chromatin accessibility and gene expression. Sin3, the largest subunit of Rpd3 …