Evolution of the germline mutation rate across vertebrates

LA Bergeron, S Besenbacher, J Zheng, P Li… - Nature, 2023 - nature.com
The germline mutation rate determines the pace of genome evolution and is an evolving
parameter itself. However, little is known about what determines its evolution, as most …

Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

M Louis, M Galimberti, F Archer, S Berrow… - Science …, 2021 - science.org
Studying repeated adaptation can provide insights into the mechanisms allowing species to
adapt to novel environments. Here, we investigate repeated evolution driven by habitat …

A putative structural variant and environmental variation associated with genomic divergence across the Northwest Atlantic in Atlantic Halibut

T Kess, AL Einfeldt, B Wringe, SJ Lehnert… - ICES Journal of …, 2021 - academic.oup.com
Characterizing the nature of genetic differentiation among individuals and populations and
its distribution across the genome is increasingly important to inform both conservation and …

Climate change from an ectotherm perspective: evolutionary consequences and demographic change in amphibian and reptilian populations

SI Hayden Bofill, MPK Blom - Biodiversity and Conservation, 2024 - Springer
Understanding how natural populations will respond to contemporary changes in climate is
becoming increasingly urgent and of fundamental importance for the preservation of future …

Repetitive genomic regions and the inference of demographic history

AB Patil, N Vijay - Heredity, 2021 - nature.com
Inference of demographic histories using whole-genome datasets has provided insights into
diversification, adaptation, hybridization, and plant–pathogen interactions, and stimulated …

“Type D” killer whale genomes reveal long-term small population size and low genetic diversity

AD Foote, A Alexander, LT Ballance… - Journal of …, 2023 - academic.oup.com
Genome sequences can reveal the extent of inbreeding in small populations. Here, we
present the first genomic characterization of type D killer whales, a distinctive …

Evaluating genome assemblies and gene models using gVolante

O Nishimura, Y Hara, S Kuraku - Gene prediction: methods and protocols, 2019 - Springer
In daily practice of de novo genome assembly and gene prediction, it would be a natural
urge to evaluate their products. Different programs and parameter settings give rise to …

The genome sequence of Mesua ferrea and comparative demographic histories of forest trees

AB Patil, SS Shinde, S Raghavendra, BN Satish… - Gene, 2021 - Elsevier
Abstract Mesua ferrea (Family: Calophyllaceae) is a tropical forest plant used for timber,
biofuel, and traditional medicine. Colloquially, it is known as Nagkesar (Cobra saffron) and …

Whole genome resequencing data for three rockfish species of Sebastes

S Xu, L Zhao, S **ao, T Gao - Scientific Data, 2019 - nature.com
Here we report Illumina-based whole genome sequencing of three rockfish species of
Sebastes in northwest Pacific. The whole genomic DNA was used to prepare 350-bp pair …

Conservation genomic analysis reveals ancient introgression and declining levels of genetic diversity in Madagascar's hibernating dwarf lemurs

RC Williams, MB Blanco, JW Poelstra, KE Hunnicutt… - Heredity, 2020 - nature.com
Madagascar's biodiversity is notoriously threatened by deforestation and climate change.
Many of these organisms are rare, cryptic, and severely threatened, making population-level …