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Evolution of the germline mutation rate across vertebrates
LA Bergeron, S Besenbacher, J Zheng, P Li… - Nature, 2023 - nature.com
The germline mutation rate determines the pace of genome evolution and is an evolving
parameter itself. However, little is known about what determines its evolution, as most …
parameter itself. However, little is known about what determines its evolution, as most …
Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins
Studying repeated adaptation can provide insights into the mechanisms allowing species to
adapt to novel environments. Here, we investigate repeated evolution driven by habitat …
adapt to novel environments. Here, we investigate repeated evolution driven by habitat …
A putative structural variant and environmental variation associated with genomic divergence across the Northwest Atlantic in Atlantic Halibut
Characterizing the nature of genetic differentiation among individuals and populations and
its distribution across the genome is increasingly important to inform both conservation and …
its distribution across the genome is increasingly important to inform both conservation and …
Climate change from an ectotherm perspective: evolutionary consequences and demographic change in amphibian and reptilian populations
SI Hayden Bofill, MPK Blom - Biodiversity and Conservation, 2024 - Springer
Understanding how natural populations will respond to contemporary changes in climate is
becoming increasingly urgent and of fundamental importance for the preservation of future …
becoming increasingly urgent and of fundamental importance for the preservation of future …
Repetitive genomic regions and the inference of demographic history
Inference of demographic histories using whole-genome datasets has provided insights into
diversification, adaptation, hybridization, and plant–pathogen interactions, and stimulated …
diversification, adaptation, hybridization, and plant–pathogen interactions, and stimulated …
“Type D” killer whale genomes reveal long-term small population size and low genetic diversity
Genome sequences can reveal the extent of inbreeding in small populations. Here, we
present the first genomic characterization of type D killer whales, a distinctive …
present the first genomic characterization of type D killer whales, a distinctive …
Evaluating genome assemblies and gene models using gVolante
O Nishimura, Y Hara, S Kuraku - Gene prediction: methods and protocols, 2019 - Springer
In daily practice of de novo genome assembly and gene prediction, it would be a natural
urge to evaluate their products. Different programs and parameter settings give rise to …
urge to evaluate their products. Different programs and parameter settings give rise to …
The genome sequence of Mesua ferrea and comparative demographic histories of forest trees
Abstract Mesua ferrea (Family: Calophyllaceae) is a tropical forest plant used for timber,
biofuel, and traditional medicine. Colloquially, it is known as Nagkesar (Cobra saffron) and …
biofuel, and traditional medicine. Colloquially, it is known as Nagkesar (Cobra saffron) and …
Whole genome resequencing data for three rockfish species of Sebastes
S Xu, L Zhao, S **ao, T Gao - Scientific Data, 2019 - nature.com
Here we report Illumina-based whole genome sequencing of three rockfish species of
Sebastes in northwest Pacific. The whole genomic DNA was used to prepare 350-bp pair …
Sebastes in northwest Pacific. The whole genomic DNA was used to prepare 350-bp pair …
Conservation genomic analysis reveals ancient introgression and declining levels of genetic diversity in Madagascar's hibernating dwarf lemurs
Madagascar's biodiversity is notoriously threatened by deforestation and climate change.
Many of these organisms are rare, cryptic, and severely threatened, making population-level …
Many of these organisms are rare, cryptic, and severely threatened, making population-level …