Computational approaches streamlining drug discovery
Computer-aided drug discovery has been around for decades, although the past few years
have seen a tectonic shift towards embracing computational technologies in both academia …
have seen a tectonic shift towards embracing computational technologies in both academia …
Molecular docking: principles, advances, and its applications in drug discovery
Molecular docking is a structure-based computational method that generates the binding
pose and affinity between ligands and targets. There are many powerful docking programs …
pose and affinity between ligands and targets. There are many powerful docking programs …
Contrastive learning in protein language space predicts interactions between drugs and protein targets
Sequence-based prediction of drug–target interactions has the potential to accelerate drug
discovery by complementing experimental screens. Such computational prediction needs to …
discovery by complementing experimental screens. Such computational prediction needs to …
Boosting protein–ligand binding pose prediction and virtual screening based on residue–atom distance likelihood potential and graph transformer
The past few years have witnessed enormous progress toward applying machine learning
approaches to the development of protein–ligand scoring functions. However, the robust …
approaches to the development of protein–ligand scoring functions. However, the robust …
Application of computational biology and artificial intelligence in drug design
Traditional drug design requires a great amount of research time and developmental
expense. Booming computational approaches, including computational biology, computer …
expense. Booming computational approaches, including computational biology, computer …
[HTML][HTML] A guide to in silico drug design
The drug discovery process is a rocky path that is full of challenges, with the result that very
few candidates progress from hit compound to a commercially available product, often due …
few candidates progress from hit compound to a commercially available product, often due …
Evaluation of AlphaFold2 structures as docking targets
AlphaFold2 is a promising new tool for researchers to predict protein structures and
generate high‐quality models, with low backbone and global root‐mean‐square deviation …
generate high‐quality models, with low backbone and global root‐mean‐square deviation …
A generalized protein–ligand scoring framework with balanced scoring, docking, ranking and screening powers
Applying machine learning algorithms to protein–ligand scoring functions has aroused
widespread attention in recent years due to the high predictive accuracy and affordable …
widespread attention in recent years due to the high predictive accuracy and affordable …
DrugRep: an automatic virtual screening server for drug repurposing
J Gan, J Liu, Y Liu, S Chen, W Dai, ZX **ao… - Acta Pharmacologica …, 2023 - nature.com
Computationally identifying new targets for existing drugs has drawn much attention in drug
repurposing due to its advantages over de novo drugs, including low risk, low costs, and …
repurposing due to its advantages over de novo drugs, including low risk, low costs, and …
From traditional ethnopharmacology to modern natural drug discovery: A methodology discussion and specific examples
S Pirintsos, A Panagiotopoulos, M Bariotakis… - Molecules, 2022 - mdpi.com
Ethnopharmacology, through the description of the beneficial effects of plants, has provided
an early framework for the therapeutic use of natural compounds. Natural products, either in …
an early framework for the therapeutic use of natural compounds. Natural products, either in …