A census of human RNA-binding proteins

S Gerstberger, M Hafner, T Tuschl - Nature Reviews Genetics, 2014 - nature.com
Post-transcriptional gene regulation (PTGR) concerns processes involved in the maturation,
transport, stability and translation of coding and non-coding RNAs. RNA-binding proteins …

Sequencing-based analysis of microbiomes

Y Pinto, AS Bhatt - Nature Reviews Genetics, 2024 - nature.com
Microbiomes occupy a range of niches and, in addition to having diverse compositions, they
have varied functional roles that have an impact on agriculture, environmental sciences, and …

Dual domestications and origin of traits in grapevine evolution

Y Dong, S Duan, Q **a, Z Liang, X Dong, K Margaryan… - Science, 2023 - science.org
We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild
accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape …

The widespread IS200/IS605 transposon family encodes diverse programmable RNA-guided endonucleases

H Altae-Tran, S Kannan, FE Demircioglu, R Oshiro… - Science, 2021 - science.org
IscB proteins are putative nucleases encoded in a distinct family of IS200/IS605 transposons
and are likely ancestors of the RNA-guided endonuclease Cas9, but the functions of IscB …

RefSeq: an update on prokaryotic genome annotation and curation

DH Haft, M DiCuccio, A Badretdin, V Brover… - Nucleic acids …, 2018 - academic.oup.com
Abstract The Reference Sequence (RefSeq) project at the National Center for Biotechnology
Information (NCBI) provides annotation for over 95 000 prokaryotic genomes that meet …

The gut microbiota in multiple sclerosis varies with disease activity

F Thirion, F Sellebjerg, Y Fan, L Lyu, TH Hansen… - Genome medicine, 2023 - Springer
Background Multiple sclerosis is a chronic immune-mediated disease of the brain and spinal
cord resulting in physical and cognitive impairment in young adults. It is hypothesized that a …

Phage-plasmids spread antibiotic resistance genes through infection and lysogenic conversion

E Pfeifer, RA Bonnin, EPC Rocha - MBio, 2022 - journals.asm.org
Antibiotic resistance is rapidly spreading via the horizontal transfer of resistance genes in
mobile genetic elements. While plasmids are key drivers of this process, few integrative …

Multi-heme cytochrome-mediated extracellular electron transfer by the anaerobic methanotroph 'Candidatus Methanoperedens nitroreducens'

X Zhang, GH Joyce, AO Leu, J Zhao, H Rabiee… - Nature …, 2023 - nature.com
Anaerobic methanotrophic archaea (ANME) carry out anaerobic oxidation of methane, thus
playing a crucial role in the methane cycle. Previous genomic evidence indicates that multi …

Bacterial phylogeny structures soil resistomes across habitats

KJ Forsberg, S Patel, MK Gibson, CL Lauber, R Knight… - Nature, 2014 - nature.com
Ancient and diverse antibiotic resistance genes (ARGs) have previously been identified from
soil,,, including genes identical to those in human pathogens. Despite the apparent overlap …

Individual intestinal symbionts induce a distinct population of RORγ+ regulatory T cells

E Sefik, N Geva-Zatorsky, S Oh, L Konnikova… - Science, 2015 - science.org
T regulatory cells that express the transcription factor Foxp3 (Foxp3+ Tregs) promote tissue
homeostasis in several settings. We now report that symbiotic members of the human gut …