Metagenomic experiments expose the wide range of microscopic organisms in any
microbial environment through high-throughput DNA sequencing. The computational …

Various fields have been identified in the “omics” era, such as genomics, proteomics,
transcriptomics, metabolomics, phenomics, and metagenomics. Among these …

Since the exploration of sequencing began in 2005, third and next-generation sequencing
(TGS and NGS) technologies have fundamentally changed metagenomics research. These …

The human body hosts a complex and dynamic population of trillions of microorganisms—
the microbiota—which influences the body in homeostasis and disease, including cancer …

Long-read sequencing has recently transformed metagenomics, enhancing strain-level
pathogen characterization, enabling accurate and complete metagenome-assembled …

Despite its harsh and dry environment, human skin is home to diverse microbes, including
bacteria, fungi, viruses, and microscopic mites. These microbes form communities that may …

Repetitive DNA (repeats) poses significant challenges for accurate and efficient genome
assembly and sequence alignment. This is particularly true for metagenomic data, in which …

Microbial co-hosts of nitrate reduction genes (NRGs) and antibiotic resistance genes (ARGs)
have been recently reported, but their ecology and biochemical role in urban waterways …

Multi-omics analysis is a powerful tool for the detection and study of inter-kingdom
interactions, such as those between bacterial and archaeal members of complex biogas …

Motivation Despite recent advancements in sequencing technologies and assembly
methods, obtaining high-quality microbial genomes from metagenomic samples is still not a …