CRISPR–Cas9 gRNA efficiency prediction: an overview of predictive tools and the role of deep learning

V Konstantakos, A Nentidis, A Krithara… - Nucleic Acids …, 2022 - academic.oup.com
The clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated
protein 9 (Cas9) system has become a successful and promising technology for gene …

Advancing genome editing with artificial intelligence: opportunities, challenges, and future directions

S Dixit, A Kumar, K Srinivasan… - … in Bioengineering and …, 2024 - frontiersin.org
Clustered regularly interspaced short palindromic repeat (CRISPR)-based genome editing
(GED) technologies have unlocked exciting possibilities for understanding genes and …

Human-interpretable image features derived from densely mapped cancer pathology slides predict diverse molecular phenotypes

JA Diao, JK Wang, WF Chui, V Mountain… - Nature …, 2021 - nature.com
Computational methods have made substantial progress in improving the accuracy and
throughput of pathology workflows for diagnostic, prognostic, and genomic prediction. Still …

Machine learning uncovers the most robust self-report predictors of relationship quality across 43 longitudinal couples studies

S Joel, PW Eastwick, CJ Allison, XB Arriaga… - Proceedings of the …, 2020 - pnas.org
Given the powerful implications of relationship quality for health and well-being, a central
mission of relationship science is explaining why some romantic relationships thrive more …

Discovering phases, phase transitions, and crossovers through unsupervised machine learning: A critical examination

W Hu, RRP Singh, RT Scalettar - Physical Review E, 2017 - APS
We apply unsupervised machine learning techniques, mainly principal component analysis
(PCA), to compare and contrast the phase behavior and phase transitions in several …

Data-driven advice for applying machine learning to bioinformatics problems

RS Olson, WL Cava, Z Mustahsan, A Varik… - Pacific symposium on …, 2018 - World Scientific
As the bioinformatics field grows, it must keep pace not only with new data but with new
algorithms. Here we contribute a thorough analysis of 13 state-of-the-art, commonly used …

Epistasis—the essential role of gene interactions in the structure and evolution of genetic systems

PC Phillips - Nature Reviews Genetics, 2008 - nature.com
Epistasis, or interactions between genes, has long been recognized as fundamentally
important to understanding the structure and function of genetic pathways and the …

Detecting gene–gene interactions that underlie human diseases

HJ Cordell - Nature Reviews Genetics, 2009 - nature.com
Following the identification of several disease-associated polymorphisms by genome-wide
association (GWA) analysis, interest is now focusing on the detection of effects that, owing to …

Predictive data mining in clinical medicine: current issues and guidelines

R Bellazzi, B Zupan - International journal of medical informatics, 2008 - Elsevier
BACKGROUND: The widespread availability of new computational methods and tools for
data analysis and predictive modeling requires medical informatics researchers and …

A review of ensemble methods in bioinformatics

P Yang, Y Hwa Yang, BB Zhou… - Current …, 2010 - ingentaconnect.com
Ensemble learning is an intensively studied technique in machine learning and pattern
recognition. Recent work in computational biology has seen an increasing use of ensemble …