Predicting protein–protein interactions from the molecular to the proteome level
Identification of protein–protein interactions (PPIs) is at the center of molecular biology
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …
[HTML][HTML] Protein–protein interaction prediction with deep learning: A comprehensive review
Most proteins perform their biological function by interacting with themselves or other
molecules. Thus, one may obtain biological insights into protein functions, disease …
molecules. Thus, one may obtain biological insights into protein functions, disease …
Inference of macromolecular assemblies from crystalline state
We discuss basic physical–chemical principles underlying the formation of stable
macromolecular complexes, which in many cases are likely to be the biological units …
macromolecular complexes, which in many cases are likely to be the biological units …
Principles of protein− protein interactions: what are the preferred ways for proteins to interact?
Proteins are the working horse of the cellular machinery. They are responsible for diverse
functions ranging from molecular motors to signaling. They catalyze reactions, transport …
functions ranging from molecular motors to signaling. They catalyze reactions, transport …
Hot regions in protein–protein interactions: the organization and contribution of structurally conserved hot spot residues
Structurally conserved residues at protein–protein interfaces correlate with the experimental
alanine-scanning hot spots. Here, we investigate the organization of these conserved …
alanine-scanning hot spots. Here, we investigate the organization of these conserved …
Transient protein–protein interactions
Transient complexes are crucial for diverse biological processes such as biochemical
pathways and signaling cascades in the cell. Here, we give an overview of the transient …
pathways and signaling cascades in the cell. Here, we give an overview of the transient …
Deciphering protein–protein interactions. Part I. Experimental techniques and databases
BA Shoemaker, AR Panchenko - PLoS computational biology, 2007 - journals.plos.org
Proteins interact with each other in a highly specific manner, and protein interactions play a
key role in many cellular processes; in particular, the distortion of protein interfaces may lead …
key role in many cellular processes; in particular, the distortion of protein interfaces may lead …
Cation–π interactions in protein–protein interfaces
PB Crowley, A Golovin - Proteins: Structure, Function, and …, 2005 - Wiley Online Library
Arginine is an abundant residue in protein–protein interfaces. The importance of this residue
relates to the versatility of its side chain in intermolecular interactions. Different classes of …
relates to the versatility of its side chain in intermolecular interactions. Different classes of …
Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
Prediction of protein-protein interactions at the structural level on the proteome scale is
important because it allows prediction of protein function, helps drug discovery and takes …
important because it allows prediction of protein function, helps drug discovery and takes …
Crystal contacts as nature's docking solutions
E Krissinel - Journal of computational chemistry, 2010 - Wiley Online Library
The assumption that crystal contacts reflect natural macromolecular interactions makes a
basis for many studies in structural biology. However, the crystal state may correspond to a …
basis for many studies in structural biology. However, the crystal state may correspond to a …