The structure of ecological networks across levels of organization

PR Guimaraes Jr - Annual Review of Ecology, Evolution, and …, 2020 - annualreviews.org
Interactions connect the units of ecological systems, forming networks. Individual-based
networks characterize variation in niches among individuals within populations. These …

Ecological and evolutionary legacy of megafauna extinctions

M Galetti, M Moleón, P Jordano, MM Pires… - Biological …, 2018 - Wiley Online Library
For hundreds of millions of years, large vertebrates (megafauna) have inhabited most of the
ecosystems on our planet. During the late Quaternary, notably during the Late P leistocene …

Obligate cross-feeding expands the metabolic niche of bacteria

L Oña, S Giri, N Avermann, M Kreienbaum… - Nature Ecology & …, 2021 - nature.com
Bacteria frequently engage in obligate metabolic mutualisms with other microorganisms.
However, it remains generally unclear how the resulting metabolic dependencies affect the …

Interchange of entire communities: microbial community coalescence

MC Rillig, J Antonovics, T Caruso, A Lehmann… - Trends in Ecology & …, 2015 - cell.com
Microbial communities are enigmatically diverse. We propose a novel view of processes
likely affecting microbial assemblages, which could be viewed as the Great American …

Contrasting co‐occurrence patterns of photobiont and cystobasidiomycete yeast associated with common epiphytic lichen species

K Mark, L Laanisto, CG Bueno, Ü Niinemets… - New …, 2020 - Wiley Online Library
The popular dual definition of lichen symbiosis is under question with recent findings of
additional microbial partners living within the lichen body. Here we compare the distribution …

Assembly of complex plant–fungus networks

H Toju, PR Guimaraes, JM Olesen… - Nature …, 2014 - nature.com
Species in ecological communities build complex webs of interaction. Although revealing
the architecture of these networks is fundamental to understanding ecological and …

MODULAR: software for the autonomous computation of modularity in large network sets

FMD Marquitti, PR Guimaraes Jr, MM Pires… - …, 2014 - Wiley Online Library
Many ecological systems can be represented as networks of interactions. A key feature in
these networks is their organization into modules, which are subsets of tightly connected …

Coexistence of nestedness and modularity in host–pathogen infection networks

S Valverde, B Vidiella, R Montanez, A Fraile… - Nature Ecology & …, 2020 - nature.com
The long-term coevolution of hosts and pathogens in their environment forms a complex
web of multi-scale interactions. Understanding how environmental heterogeneity affects the …

Moving from frugivory to seed dispersal: Incorporating the functional outcomes of interactions in plant–frugivore networks

BI Simmons, WJ Sutherland, LV Dicks… - Journal of Animal …, 2018 - Wiley Online Library
There is growing interest in understanding the functional outcomes of species interactions in
ecological networks. For many mutualistic networks, including pollination and seed …

Collapse of an ecological network in Ancient Egypt

JD Yeakel, MM Pires, L Rudolf… - Proceedings of the …, 2014 - National Acad Sciences
The dynamics of ecosystem collapse are fundamental to determining how and why
biological communities change through time, as well as the potential effects of extinctions on …