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[HTML][HTML] Intrinsically disordered proteins: an overview
Many proteins and protein segments cannot attain a single stable three-dimensional
structure under physiological conditions; instead, they adopt multiple interconverting …
structure under physiological conditions; instead, they adopt multiple interconverting …
Intrinsically disordered proteins play diverse roles in cell signaling
Signaling pathways allow cells to detect and respond to a wide variety of chemical (eg Ca2+
or chemokine proteins) and physical stimuli (eg, sheer stress, light). Together, these …
or chemokine proteins) and physical stimuli (eg, sheer stress, light). Together, these …
Biological soft matter: intrinsically disordered proteins in liquid–liquid phase separation and biomolecular condensates
AV Fonin, IA Antifeeva, IM Kuznetsova… - Essays in …, 2022 - portlandpress.com
The facts that many proteins with crucial biological functions do not have unique structures
and that many biological processes are compartmentalized into the liquid-like biomolecular …
and that many biological processes are compartmentalized into the liquid-like biomolecular …
DeepDISOBind: accurate prediction of RNA-, DNA-and protein-binding intrinsically disordered residues with deep multi-task learning
Proteins with intrinsically disordered regions (IDRs) are common among eukaryotes. Many
IDRs interact with nucleic acids and proteins. Annotation of these interactions is supported …
IDRs interact with nucleic acids and proteins. Annotation of these interactions is supported …
Tutorial: a guide for the selection of fast and accurate computational tools for the prediction of intrinsic disorder in proteins
Intrinsic disorder is instrumental for a wide range of protein functions, and its analysis, using
computational predictions from primary structures, complements secondary and tertiary …
computational predictions from primary structures, complements secondary and tertiary …
DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction
Intrinsic disorder in proteins is relatively abundant in nature and essential for a broad
spectrum of cellular functions. While disorder can be accurately predicted from protein …
spectrum of cellular functions. While disorder can be accurately predicted from protein …
Identifying molecular features that are associated with biological function of intrinsically disordered protein regions
In previous work, we showed that intrinsically disordered regions (IDRs) of proteins contain
sequence-distributed molecular features that are conserved over evolution, despite little …
sequence-distributed molecular features that are conserved over evolution, despite little …
Systematic identification of 20S proteasome substrates
M Pepelnjak, R Rogawski, G Arkind… - Molecular Systems …, 2024 - embopress.org
For years, proteasomal degradation was predominantly attributed to the ubiquitin-26S
proteasome pathway. However, it is now evident that the core 20S proteasome can …
proteasome pathway. However, it is now evident that the core 20S proteasome can …
DisoLipPred: accurate prediction of disordered lipid-binding residues in protein sequences with deep recurrent networks and transfer learning
Motivation Intrinsically disordered protein regions interact with proteins, nucleic acids and
lipids. Regions that bind lipids are implicated in a wide spectrum of cellular functions and …
lipids. Regions that bind lipids are implicated in a wide spectrum of cellular functions and …
Computational prediction of disordered binding regions
One of the key features of intrinsically disordered regions (IDRs) is their ability to interact
with a broad range of partner molecules. Multiple types of interacting IDRs were identified …
with a broad range of partner molecules. Multiple types of interacting IDRs were identified …