[HTML][HTML] Intrinsically disordered proteins: an overview

R Trivedi, HA Nagarajaram - International journal of molecular sciences, 2022 - mdpi.com
Many proteins and protein segments cannot attain a single stable three-dimensional
structure under physiological conditions; instead, they adopt multiple interconverting …

Intrinsically disordered proteins play diverse roles in cell signaling

SE Bondos, AK Dunker, VN Uversky - Cell Communication and Signaling, 2022 - Springer
Signaling pathways allow cells to detect and respond to a wide variety of chemical (eg Ca2+
or chemokine proteins) and physical stimuli (eg, sheer stress, light). Together, these …

Biological soft matter: intrinsically disordered proteins in liquid–liquid phase separation and biomolecular condensates

AV Fonin, IA Antifeeva, IM Kuznetsova… - Essays in …, 2022 - portlandpress.com
The facts that many proteins with crucial biological functions do not have unique structures
and that many biological processes are compartmentalized into the liquid-like biomolecular …

DeepDISOBind: accurate prediction of RNA-, DNA-and protein-binding intrinsically disordered residues with deep multi-task learning

F Zhang, B Zhao, W Shi, M Li… - Briefings in …, 2022 - academic.oup.com
Proteins with intrinsically disordered regions (IDRs) are common among eukaryotes. Many
IDRs interact with nucleic acids and proteins. Annotation of these interactions is supported …

Tutorial: a guide for the selection of fast and accurate computational tools for the prediction of intrinsic disorder in proteins

L Kurgan, G Hu, K Wang, S Ghadermarzi, B Zhao… - Nature …, 2023 - nature.com
Intrinsic disorder is instrumental for a wide range of protein functions, and its analysis, using
computational predictions from primary structures, complements secondary and tertiary …

DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction

S Basu, J Gsponer, L Kurgan - Nucleic Acids Research, 2023 - academic.oup.com
Intrinsic disorder in proteins is relatively abundant in nature and essential for a broad
spectrum of cellular functions. While disorder can be accurately predicted from protein …

Identifying molecular features that are associated with biological function of intrinsically disordered protein regions

T Zarin, B Strome, G Peng, I Pritišanac, JD Forman-Kay… - Elife, 2021 - elifesciences.org
In previous work, we showed that intrinsically disordered regions (IDRs) of proteins contain
sequence-distributed molecular features that are conserved over evolution, despite little …

Systematic identification of 20S proteasome substrates

M Pepelnjak, R Rogawski, G Arkind… - Molecular Systems …, 2024 - embopress.org
For years, proteasomal degradation was predominantly attributed to the ubiquitin-26S
proteasome pathway. However, it is now evident that the core 20S proteasome can …

DisoLipPred: accurate prediction of disordered lipid-binding residues in protein sequences with deep recurrent networks and transfer learning

A Katuwawala, B Zhao, L Kurgan - Bioinformatics, 2022 - academic.oup.com
Motivation Intrinsically disordered protein regions interact with proteins, nucleic acids and
lipids. Regions that bind lipids are implicated in a wide spectrum of cellular functions and …

Computational prediction of disordered binding regions

S Basu, D Kihara, L Kurgan - Computational and Structural Biotechnology …, 2023 - Elsevier
One of the key features of intrinsically disordered regions (IDRs) is their ability to interact
with a broad range of partner molecules. Multiple types of interacting IDRs were identified …