A comprehensive survey on trustworthy graph neural networks: Privacy, robustness, fairness, and explainability

E Dai, T Zhao, H Zhu, J Xu, Z Guo, H Liu, J Tang… - Machine Intelligence …, 2024 - Springer
Graph neural networks (GNNs) have made rapid developments in the recent years. Due to
their great ability in modeling graph-structured data, GNNs are vastly used in various …

A survey on graph counterfactual explanations: definitions, methods, evaluation, and research challenges

MA Prado-Romero, B Prenkaj, G Stilo… - ACM Computing …, 2024 - dl.acm.org
Graph Neural Networks (GNNs) perform well in community detection and molecule
classification. Counterfactual Explanations (CE) provide counter-examples to overcome the …

Explainable ai for bioinformatics: Methods, tools and applications

MR Karim, T Islam, M Shajalal, O Beyan… - Briefings in …, 2023 - academic.oup.com
Artificial intelligence (AI) systems utilizing deep neural networks and machine learning (ML)
algorithms are widely used for solving critical problems in bioinformatics, biomedical …

Graph neural networks for vulnerability detection: A counterfactual explanation

Z Chu, Y Wan, Q Li, Y Wu, H Zhang, Y Sui… - Proceedings of the 33rd …, 2024 - dl.acm.org
Vulnerability detection is crucial for ensuring the security and reliability of software systems.
Recently, Graph Neural Networks (GNNs) have emerged as a prominent code embedding …

[PDF][PDF] Counterfactual learning on graphs: A survey

Z Guo, Z Wu, T **ao, C Aggarwal, H Liu… - Machine Intelligence …, 2025 - Springer
Graph-structured data are pervasive in the real-world such as social networks, molecular
graphs and transaction networks. Graph neural networks (GNNs) have achieved great …

A cross attention approach to diagnostic explainability using clinical practice guidelines for depression

S Dalal, D Tilwani, M Gaur, S Jain… - IEEE Journal of …, 2024 - ieeexplore.ieee.org
The lack of explainability in using relevant clinical knowledge hinders the adoption of
artificial intelligence-powered analysis of unstructured clinical dialogue. A wealth of relevant …

Towards embedding ambiguity-sensitive graph neural network explainability

X Liu, Y Ma, D Chen, L Liu - IEEE Transactions on Fuzzy …, 2024 - ieeexplore.ieee.org
Recently, many post hoc graph neural network (GNN) explanation methods have been
explored to uncover GNNs' predictive behaviors by analyzing the embeddings produced by …

View-based explanations for graph neural networks

T Chen, D Qiu, Y Wu, A Khan, X Ke, Y Gao - Proceedings of the ACM on …, 2024 - dl.acm.org
Generating explanations for graph neural networks (GNNs) has been studied to understand
their behaviors in analytical tasks such as graph classification. Existing approaches aim to …

Gnnuers: Fairness explanation in gnns for recommendation via counterfactual reasoning

G Medda, F Fabbri, M Marras, L Boratto… - ACM Transactions on …, 2024 - dl.acm.org
Nowadays, research into personalization has been focusing on explainability and fairness.
Several approaches proposed in recent works are able to explain individual …

Towards explaining graph neural networks via preserving prediction ranking and structural dependency

Y Zhang, WK Cheung, Q Liu, G Wang, L Yang… - Information Processing & …, 2024 - Elsevier
Abstract Graph Neural Networks (GNNs) have demonstrated their efficacy in representing
graph-structured data, but their lack of explainability hinders their applicability to critical …