A review of machine learning and algorithmic methods for protein phosphorylation site prediction

F Esmaili, M Pourmirzaei, S Ramazi… - Genomics …, 2023 - academic.oup.com
Post-translational modifications (PTMs) have key roles in extending the functional diversity
of proteins and, as a result, regulating diverse cellular processes in prokaryotic and …

[HTML][HTML] Emphasizing the role of long non-coding RNAs (lncRNA), circular RNA (circRNA), and micropeptides (miPs) in plant biotic stress tolerance

A Bhar, A Roy - Plants, 2023 - mdpi.com
Biotic stress tolerance in plants is complex as it relies solely on specific innate immune
responses from different plant species combating diverse pathogens. Each component of …

Heat stress in legume seed setting: effects, causes, and future prospects

Y Liu, J Li, Y Zhu, A Jones, RJ Rose… - Frontiers in Plant …, 2019 - frontiersin.org
Grain legumes provide a rich resource of plant nutrition to human diets and are vital for food
security and sustainable crop**. Heat stress during flowering has a detrimental effect on …

Pathogenicity of animal and plant parasitic Aphanomyces spp and their economic impact on aquaculture and agriculture

T Becking, A Kiselev, V Rossi, D Street-Jones… - Fungal Biology …, 2022 - Elsevier
Parasitic Aphanomyces species are a global threat to agri-and aquaculture, causing
multimillion USD damage every year. Via the global trade, Aphanomyces has spread across …

Mutational analysis indicates that abnormalities in rhizobial infection and subsequent plant cell and bacteroid differentiation in pea (Pisum sativum) nodules coincide …

EA Dolgikh, PG Kusakin, AB Kitaeva… - Annals of …, 2020 - academic.oup.com
Abstract Background and Aims Recent findings indicate that Nod factor signalling is tightly
interconnected with phytohormonal regulation that affects the development of nodules …

A perspective on develo** a plant 'holobiont'for future saline agriculture

CG Ren, CC Kong, ZY Liu, ZH Zhong… - Frontiers in …, 2022 - frontiersin.org
Soil salinity adversely affects plant growth and has become a major limiting factor for
agricultural development worldwide. There is a continuing demand for sustainable …

Strategies to Apply Water-Deficit Stress: Similarities and Disparities at the Whole Plant Metabolism Level in Medicago truncatula

V Castañeda, EM González - International Journal of Molecular Sciences, 2021 - mdpi.com
Water-deficit stresses such as drought and salinity are the most important factors limiting
crop productivity. Hence, understanding the plant responses to these stresses is key for the …

Plastid phylogenomics uncovers multiple species in Medicago truncatula (Fabaceae) germplasm accessions

IS Choi, MF Wojciechowski, KP Steele, A Hopkins… - Scientific reports, 2022 - nature.com
Medicago truncatula is a model legume that has been extensively investigated in diverse
subdisciplines of plant science. Medicago littoralis can interbreed with M. truncatula and M …

[HTML][HTML] The PH Domain and C-Terminal polyD Motif of Phafin2 Exhibit a Unique Concurrence in Animals

M Hasan, DGS Capelluto - Membranes, 2022 - mdpi.com
Phafin2, a member of the Phafin family of proteins, contributes to a plethora of cellular
activities including autophagy, endosomal cargo transportation, and macropinocytosis. The …

Born in the mitochondrion and raised in the nucleus: evolution of a novel tandem repeat family in Medicago polymorpha (Fabaceae)

IS Choi, MF Wojciechowski, KP Steele… - The Plant …, 2022 - Wiley Online Library
Plant nuclear genomes harbor sequence elements derived from the organelles
(mitochondrion and plastid) through intracellular gene transfer (IGT). Nuclear genomes also …