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Diversity and evolution of methane-related pathways in archaea
Methane is one of the most important greenhouse gases on Earth and holds an important
place in the global carbon cycle. Archaea are the only organisms that use methanogenesis …
place in the global carbon cycle. Archaea are the only organisms that use methanogenesis …
[HTML][HTML] Plasmid classifications
Plasmids are universally present in bacteria and play key roles in the dissemination of
genes such as antibiotic resistance determinants. Major concepts in Plasmid Biology derive …
genes such as antibiotic resistance determinants. Major concepts in Plasmid Biology derive …
Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome
Large serine recombinases (LSRs) are DNA integrases that facilitate the site-specific
integration of mobile genetic elements into bacterial genomes. Only a few LSRs, such as …
integration of mobile genetic elements into bacterial genomes. Only a few LSRs, such as …
Systematic and quantitative view of the antiviral arsenal of prokaryotes
Bacteria and archaea have developed multiple antiviral mechanisms, and genomic
evidence indicates that several of these antiviral systems co-occur in the same strain. Here …
evidence indicates that several of these antiviral systems co-occur in the same strain. Here …
[HTML][HTML] Phages and their satellites encode hotspots of antiviral systems
Bacteria carry diverse genetic systems to defend against viral infection, some of which are
found within prophages where they inhibit competing viruses. Phage satellites pose …
found within prophages where they inhibit competing viruses. Phage satellites pose …
Bacteriophages inhibit and evade cGAS-like immune function in bacteria
A fundamental strategy of eukaryotic antiviral immunity involves the cGAS enzyme, which
synthesizes 2′, 3′-cGAMP and activates the effector STING. Diverse bacteria contain …
synthesizes 2′, 3′-cGAMP and activates the effector STING. Diverse bacteria contain …
Prediction of strain level phage–host interactions across the Escherichia genus using only genomic information
Predicting bacteriophage infection of specific bacterial strains promises advancements in
phage therapy and microbial ecology. Whether the dynamics of well-established phage …
phage therapy and microbial ecology. Whether the dynamics of well-established phage …
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
CRISPR (clustered regularly interspaced short palindromic repeats) arrays and their
associated (Cas) proteins confer bacteria and archaea adaptive immunity against …
associated (Cas) proteins confer bacteria and archaea adaptive immunity against …
Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types
To provide protection against viral infection and limit the uptake of mobile genetic elements,
bacteria and archaea have evolved many diverse defence systems. The discovery and …
bacteria and archaea have evolved many diverse defence systems. The discovery and …
A catalogue of 1,167 genomes from the human gut archaeome
The human gut microbiome plays an important role in health, but its archaeal diversity
remains largely unexplored. In the present study, we report the analysis of 1,167 …
remains largely unexplored. In the present study, we report the analysis of 1,167 …