Diversity and evolution of methane-related pathways in archaea

PS Garcia, S Gribaldo, G Borrel - Annual Review of Microbiology, 2022 - annualreviews.org
Methane is one of the most important greenhouse gases on Earth and holds an important
place in the global carbon cycle. Archaea are the only organisms that use methanogenesis …

[HTML][HTML] Plasmid classifications

MP Garcillán-Barcia, S Redondo-Salvo, F de la Cruz - Plasmid, 2023 - Elsevier
Plasmids are universally present in bacteria and play key roles in the dissemination of
genes such as antibiotic resistance determinants. Major concepts in Plasmid Biology derive …

Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome

MG Durrant, A Fanton, J Tycko, M Hinks… - Nature …, 2023 - nature.com
Large serine recombinases (LSRs) are DNA integrases that facilitate the site-specific
integration of mobile genetic elements into bacterial genomes. Only a few LSRs, such as …

Systematic and quantitative view of the antiviral arsenal of prokaryotes

F Tesson, A Hervé, E Mordret, M Touchon… - Nature …, 2022 - nature.com
Bacteria and archaea have developed multiple antiviral mechanisms, and genomic
evidence indicates that several of these antiviral systems co-occur in the same strain. Here …

[HTML][HTML] Phages and their satellites encode hotspots of antiviral systems

F Rousset, F Depardieu, S Miele, J Dowding… - Cell host & …, 2022 - cell.com
Bacteria carry diverse genetic systems to defend against viral infection, some of which are
found within prophages where they inhibit competing viruses. Phage satellites pose …

Bacteriophages inhibit and evade cGAS-like immune function in bacteria

E Huiting, X Cao, J Ren, JS Athukoralage, Z Luo… - Cell, 2023 - cell.com
A fundamental strategy of eukaryotic antiviral immunity involves the cGAS enzyme, which
synthesizes 2′, 3′-cGAMP and activates the effector STING. Diverse bacteria contain …

Prediction of strain level phage–host interactions across the Escherichia genus using only genomic information

B Gaborieau, H Vaysset, F Tesson, I Charachon… - Nature …, 2024 - nature.com
Predicting bacteriophage infection of specific bacterial strains promises advancements in
phage therapy and microbial ecology. Whether the dynamics of well-established phage …

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

D Couvin, A Bernheim, C Toffano-Nioche… - Nucleic acids …, 2018 - academic.oup.com
CRISPR (clustered regularly interspaced short palindromic repeats) arrays and their
associated (Cas) proteins confer bacteria and archaea adaptive immunity against …

Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types

LJ Payne, TC Todeschini, Y Wu, BJ Perry… - Nucleic acids …, 2021 - academic.oup.com
To provide protection against viral infection and limit the uptake of mobile genetic elements,
bacteria and archaea have evolved many diverse defence systems. The discovery and …

A catalogue of 1,167 genomes from the human gut archaeome

CM Chibani, A Mahnert, G Borrel, A Almeida… - Nature …, 2022 - nature.com
The human gut microbiome plays an important role in health, but its archaeal diversity
remains largely unexplored. In the present study, we report the analysis of 1,167 …