DNA methylation pathways and their crosstalk with histone methylation

J Du, LM Johnson, SE Jacobsen… - Nature reviews Molecular …, 2015 - nature.com
Methylation of DNA and of histone 3 at Lys 9 (H3K9) are highly correlated with gene
silencing in eukaryotes from fungi to humans. Both of these epigenetic marks need to be …

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

MA Matzke, RA Mosher - Nature Reviews Genetics, 2014 - nature.com
RNA-directed DNA methylation (RdDM) is the major small RNA-mediated epigenetic
pathway in plants. RdDM requires a specialized transcriptional machinery that comprises …

Widespread position-dependent transcriptional regulatory sequences in plants

Y Voichek, G Hristova, A Mollá-Morales, D Weigel… - Nature Genetics, 2024 - nature.com
Much of what we know about eukaryotic transcription stems from animals and yeast;
however, plants evolved separately for over a billion years, leaving ample time for …

Exploiting induced and natural epigenetic variation for crop improvement

NM Springer, RJ Schmitz - Nature reviews genetics, 2017 - nature.com
Plant breeding has traditionally relied on combining the genetic diversity present within a
species to develop combinations of alleles that provide desired traits. Epigenetic diversity …

SRA-and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation

LM Johnson, J Du, CJ Hale, S Bischof, S Feng… - Nature, 2014 - nature.com
RNA-directed DNA methylation in Arabidopsis thaliana depends on the upstream synthesis
of 24-nucleotide small interfering RNAs (siRNAs) by RNA POLYMERASE IV (Pol IV), and …

Epigenomic and functional analyses reveal roles of epialleles in the loss of photoperiod sensitivity during domestication of allotetraploid cottons

Q Song, T Zhang, DM Stelly, ZJ Chen - Genome biology, 2017 - Springer
Background Polyploidy is a pervasive evolutionary feature of all flowering plants and some
animals, leading to genetic and epigenetic changes that affect gene expression and …

Molecular mechanism of action of plant DRM de novo DNA methyltransferases

X Zhong, J Du, CJ Hale, J Gallego-Bartolome, S Feng… - Cell, 2014 - cell.com
DNA methylation is a conserved epigenetic gene-regulation mechanism. DOMAINS
REARRANGED METHYLTRANSFERASE (DRM) is a key de novo methyltransferase in …

The first rule of plant transposable element silencing: location, location, location

MJ Sigman, RK Slotkin - The Plant Cell, 2016 - academic.oup.com
Transposable elements (TEs) are mobile units of DNA that comprise large portions of plant
genomes. Besides creating mutations via transposition and contributing to genome size, TEs …

Arabidopsis TRB proteins function in H3K4me3 demethylation by recruiting JMJ14

M Wang, Z Zhong, J Gallego-Bartolomé, S Feng… - Nature …, 2023 - nature.com
Arabidopsis telomeric repeat binding factors (TRBs) can bind telomeric DNA sequences to
protect telomeres from degradation. TRBs can also recruit Polycomb Repressive Complex 2 …

Histone H3K4 methyltransferases SDG25 and ATX1 maintain heat‐stress gene expression during recovery in Arabidopsis

ZT Song, LL Zhang, JJ Han, M Zhou, JX Liu - The Plant Journal, 2021 - Wiley Online Library
Plants have short‐term stress memory that enables them to maintain the expression state of
a substantial subset of heat‐inducible genes during stress recovery after heat stress. Little is …