Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

Systems medicine: the future of medical genomics and healthcare

C Auffray, Z Chen, L Hood - Genome medicine, 2009 - Springer
High-throughput technologies for DNA sequencing and for analyses of transcriptomes,
proteomes and metabolomes have provided the foundations for deciphering the structure …

Data-driven medicinal chemistry in the era of big data

SJ Lusher, R McGuire, RC van Schaik… - Drug discovery today, 2014 - Elsevier
Science, and the way we undertake research, is changing. The increasing rate of data
generation across all scientific disciplines is providing incredible opportunities for data …

Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data

B Chen, X Dong, D Jiao, H Wang, Q Zhu, Y Ding… - BMC …, 2010 - Springer
Background Recently there has been an explosion of new data sources about genes,
proteins, genetic variations, chemical compounds, diseases and drugs. Integration of these …

An asynchronous communication model for distributed concurrent objects

EB Johnsen, O Owe - Software & Systems Modeling, 2007 - Springer
Distributed systems are often modeled by objects that run concurrently, each with its own
processor, and communicate by synchronous remote method calls. This may be satisfactory …

Biological knowledge management: the emerging role of the Semantic Web technologies

E Antezana, M Kuiper, V Mironov - Briefings in bioinformatics, 2009 - academic.oup.com
New knowledge is produced at a continuously increasing speed, and the list of papers,
databases and other knowledge sources that a researcher in the life sciences needs to cope …

Molecular signatures from omics data: from chaos to consensus

J Sung, Y Wang, S Chandrasekaran… - Biotechnology …, 2012 - Wiley Online Library
In the past 15 years, new “omics” technologies have made it possible to obtain high‐
resolution molecular snapshots of organisms, tissues, and even individual cells at various …

BioGateway: a semantic systems biology tool for the life sciences

E Antezana, W Blondé, M Egaña, A Rutherford… - BMC …, 2009 - Springer
Background Life scientists need help in co** with the plethora of fast growing and
scattered knowledge resources. Ideally, this knowledge should be integrated in a form that …

Systems chemical biology and the Semantic Web: what they mean for the future of drug discovery research

DJ Wild, Y Ding, AP Sheth, L Harland, EM Gifford… - Drug discovery today, 2012 - Elsevier
Systems chemical biology, the integration of chemistry, biology and computation to generate
understanding about the way small molecules affect biological systems as a whole, as well …

HyQue: evaluating hypotheses using Semantic Web technologies

A Callahan, M Dumontier, NH Shah - Journal of biomedical semantics, 2011 - Springer
Background Key to the success of e-Science is the ability to computationally evaluate expert-
composed hypotheses for validity against experimental data. Researchers face the …