Recent advances in the application of metabolomics for food safety control and food quality analyses

S Li, Y Tian, P Jiang, Y Lin, X Liu… - Critical reviews in food …, 2021 - Taylor & Francis
As one of the omics fields, metabolomics has unique advantages in facilitating the
understanding of physiological and pathological activities in biology, physiology, pathology …

Pathogenomics of Xanthomonas: understanding bacterium–plant interactions

RP Ryan, FJ Vorhölter, N Potnis, JB Jones… - Nature Reviews …, 2011 - nature.com
Xanthomonas is a large genus of Gram-negative bacteria that cause disease in hundreds of
plant hosts, including many economically important crops. Pathogenic species and …

Systems toxicology: from basic research to risk assessment

SJ Sturla, AR Boobis, RE FitzGerald… - Chemical research in …, 2014 - ACS Publications
Systems Toxicology is the integration of classical toxicology with quantitative analysis of
large networks of molecular and functional changes occurring across multiple levels of …

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

B Fan, LC Carvalhais, A Becker, D Fedoseyenko… - Bmc Microbiology, 2012 - Springer
Background Plant root exudates have been shown to play an important role in mediating
interactions between plant growth-promoting rhizobacteria (PGPR) and their host plants …

Standardization in synthetic biology: an engineering discipline coming of age

T Decoene, B De Paepe, J Maertens… - Critical reviews in …, 2018 - Taylor & Francis
Background: Lea** DNA read-and-write technologies, and extensive automation and
miniaturization are radically transforming the field of biological experimentation by providing …

AraC-like transcriptional activator CuxR binds c-di-GMP by a PilZ-like mechanism to regulate extracellular polysaccharide production

S Schäper, W Steinchen, E Krol, F Altegoer… - Proceedings of the …, 2017 - pnas.org
Cyclic dimeric GMP (c-di-GMP) has emerged as a key regulatory player in the transition
between planktonic and sedentary biofilm-associated bacterial lifestyles. It controls a …

Mayday-integrative analytics for expression data

F Battke, S Symons, K Nieselt - BMC bioinformatics, 2010 - Springer
Background DNA Microarrays have become the standard method for large scale analyses of
gene expression and epigenomics. The increasing complexity and inherent noisiness of the …

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

JP Schlüter, J Reinkensmeier, S Daschkey… - BMC genomics, 2010 - Springer
Abstract Background Small untranslated RNAs (sRNAs) are widespread regulators of gene
expression in bacteria. This study reports on a comprehensive screen for sRNAs in the …

MeltDB: a software platform for the analysis and integration of metabolomics experiment data

H Neuweger, SP Albaum, M Dondrup… - …, 2008 - academic.oup.com
Motivation: The recent advances in metabolomics have created the potential to measure the
levels of hundreds of metabolites which are the end products of cellular regulatory …

Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis

M Lohse, A Nunes-Nesi, P Krüger, A Nagel… - Plant …, 2010 - academic.oup.com
The wide application of high-throughput transcriptomics using microarrays has generated a
plethora of technical platforms, data repositories, and sophisticated statistical analysis …