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Bilinear optimization of protein structure prediction: An exact approach via AB off-lattice model
LSA da Silva, LO Seman, E Camponogara… - Computers in biology …, 2024 - Elsevier
Protein structure prediction (PSP) remains a central challenge in computational biology due
to its inherent complexity and high dimensionality. While numerous heuristic approaches …
to its inherent complexity and high dimensionality. While numerous heuristic approaches …
Inverse design of nanophotonic devices using generative adversarial networks
The efficient design of structures that exhibit desired properties is challenging across various
engineering and scientific applications. Traditional methods employ experts in a specific …
engineering and scientific applications. Traditional methods employ experts in a specific …
On the role of metaheuristic optimization in bioinformatics
Metaheuristic algorithms are employed to solve complex and large‐scale optimization
problems in many different fields, from transportation and smart cities to finance. This paper …
problems in many different fields, from transportation and smart cities to finance. This paper …
Adoption of an improved PSO to explore a compound multi-objective energy function in protein structure prediction
The protein structure prediction (PSP) problem, ie, predicting the three-dimensional structure
of a protein from its sequence, remains challenging in computational biology. The …
of a protein from its sequence, remains challenging in computational biology. The …
Protein structure optimization using improved simulated annealing algorithm on a three-dimensional AB off-lattice model
L Zhang, H Ma, W Qian, H Li - Computational Biology and Chemistry, 2020 - Elsevier
This paper proposed an improved simulated annealing (ISA) algorithm for protein structure
optimization based on a three-dimensional AB off-lattice model. In the algorithm, we …
optimization based on a three-dimensional AB off-lattice model. In the algorithm, we …
Protein folding optimization using differential evolution extended with local search and component reinitialization
B Bošković, J Brest - Information Sciences, 2018 - Elsevier
This paper presents a novel Differential Evolution algorithm for protein folding optimization
that is applied to a three-dimensional AB off-lattice model. The proposed algorithm includes …
that is applied to a three-dimensional AB off-lattice model. The proposed algorithm includes …
Fractional-order modeling and fuzzy clustering of improved artificial bee colony algorithms
S Zhou, X Xu, Z Xu, W Chang… - IEEE transactions on …, 2019 - ieeexplore.ieee.org
This article proposes an improved artificial bee colony algorithm (IABC) for maintaining a
balance between the exploratory and exploitative abilities of the algorithm. Therefore …
balance between the exploratory and exploitative abilities of the algorithm. Therefore …
A GPU-based hybrid jDE algorithm applied to the 3D-AB protein structure prediction
M Boiani, RS Parpinelli - Swarm and Evolutionary Computation, 2020 - Elsevier
Abstract The Protein Structure Prediction (PSP) problem is one of the most significant open
problems in bioinformatics. In the AB off-lattice model, the protein sequence is labeled as …
problems in bioinformatics. In the AB off-lattice model, the protein sequence is labeled as …
Selection of appropriate metaheuristic algorithms for protein structure prediction in AB off-lattice model: a perspective from fitness landscape analysis
Protein structure prediction (PSP) from its primary sequence is a challenging task in
computational biology. PSP is an optimization problem that determines the stable or native …
computational biology. PSP is an optimization problem that determines the stable or native …
Chaotic variants of grasshopper optimization algorithm and their application to protein structure prediction
It is a known fact that protein structure prediction is a challenging problem of computational
biology. In the past, several attempts of application of metaheuristic approaches have been …
biology. In the past, several attempts of application of metaheuristic approaches have been …