SAR11 bacteria: the most abundant plankton in the oceans

SJ Giovannoni - Annual review of marine science, 2017 - annualreviews.org
SAR11 is a group of small, carbon-oxidizing bacteria that reach a global estimated
population size of 2.4× 1028 cells—approximately 25% of all plankton. They are found …

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

SJ Blazewicz, RL Barnard, RA Daly… - The ISME …, 2013 - academic.oup.com
Microbes exist in a range of metabolic states (for example, dormant, active and growing) and
analysis of ribosomal RNA (rRNA) is frequently employed to identify the 'active'fraction of …

[HTML][HTML] Origin, dynamics, and implications of extracellular DNA pools in marine sediments

A Torti, MA Lever, BB Jørgensen - Marine genomics, 2015 - Elsevier
In marine sediments, DNA occurs both inside and outside living organisms. DNA not
enclosed in living cells may account for the largest fraction of total DNA, and include …

Activity of abundant and rare bacteria in a coastal ocean

BJ Campbell, L Yu, JF Heidelberg… - Proceedings of the …, 2011 - National Acad Sciences
The surface layer of the oceans and other aquatic environments contains many bacteria that
range in activity, from dormant cells to those with high rates of metabolism. However, little …

Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient

BJ Campbell, DL Kirchman - The ISME journal, 2013 - academic.oup.com
Very little is known about growth rates of individual bacterial taxa and how they respond to
environmental flux. Here, we characterized bacterial community diversity, structure and the …

Low pore connectivity increases bacterial diversity in soil

JK Carson, V Gonzalez-Quinones… - Applied and …, 2010 - Am Soc Microbiol
One of soil microbiology's most intriguing puzzles is how so many different bacterial species
can coexist in small volumes of soil when competition theory predicts that less competitive …

A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells

KC Wrighton, P Agbo, F Warnecke, KA Weber… - The ISME …, 2008 - academic.oup.com
Significant effort is currently focused on microbial fuel cells (MFCs) as a source of renewable
energy. Most studies concentrate on operation at mesophilic temperatures. However …

Sulfolipids dramatically decrease phosphorus demand by picocyanobacteria in oligotrophic marine environments

BAS Van Mooy, G Rocap… - Proceedings of the …, 2006 - National Acad Sciences
There is growing evidence that dissolved phosphorus can regulate planktonic production in
the oceans' subtropical gyres, yet there is little quantitative information about the …

Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization

MT Cottrell, DL Kirchman - Applied and Environmental …, 2000 - Am Soc Microbiol
We determined the compositions of bacterioplankton communities in surface waters of
coastal California using clone libraries of 16S rRNA genes and fluorescence in situ …

Factors influencing the detection of bacterial cells using fluorescence in situ hybridization (FISH): a quantitative review of published reports

T Bouvier, PA Del Giorgio - FEMS Microbiology Ecology, 2003 - academic.oup.com
Fluorescence in situ hybridization (FISH) is widely used to describe bacterial community
composition and, to a lesser extent, to describe the physiological state of cells. One of the …