Physics of viral dynamics

RF Bruinsma, GJL Wuite, WH Roos - Nature Reviews Physics, 2021 - nature.com
Viral capsids are often regarded as inert structural units, but in actuality they display
fascinating dynamics during different stages of their life cycle. With the advent of single …

Integrated In-Plane Nanofluidic Devices for Resistive-Pulse Sensing

TW Young, MP Kappler, ED Call… - Annual Review of …, 2024 - annualreviews.org
Single-entity (or digital) measurements enhance sensitivity (10-to 100-fold improvement)
and uncover heterogeneity within a population (one event in 100 to 10,000). Many biological …

Nanofluidic devices and applications for biological analyses

K Yamamoto, N Ota, Y Tanaka - Analytical Chemistry, 2020 - ACS Publications
As analytical interests have become targeted on sensitive detection of objects of a tiny size
and volume, various fields in analytical chemistry have been developed to overcome …

Seeing biomolecular condensates through the lens of viruses

A Borodavka, J Acker - Annual Review of Virology, 2023 - annualreviews.org
Phase separation of viral biopolymers is a key factor in the formation of cytoplasmic viral
inclusions, known as sites of virus replication and assembly. This review describes the …

Virus self-assembly proceeds through contact-rich energy minima

P Buzón, S Maity, P Christodoulis, MJ Wiertsema… - Science …, 2021 - science.org
Self-assembly of supramolecular complexes such as viral capsids occurs prominently in
nature. Nonetheless, the mechanisms underlying these processes remain poorly …

Multiscale modeling of hepatitis B virus capsid assembly and its dimorphism

F Mohajerani, B Tyukodi, CJ Schlicksup… - ACS …, 2022 - ACS Publications
Hepatitis B virus (HBV) is an endemic, chronic virus that leads to 800000 deaths per year.
Central to the HBV lifecycle, the viral core has a protein capsid assembled from many copies …

Rapidly forming early intermediate structures dictate the pathway of capsid assembly

R Asor, CJ Schlicksup, Z Zhao, A Zlotnick… - Journal of the …, 2020 - ACS Publications
There are∼ 1030 possible intermediates on the assembly path from hepatitis B capsid
protein dimers to the 120-dimer capsid. If every intermediate was tested, assembly would …

Markov state model approach to simulate self-assembly

A Trubiano, MF Hagan - Physical Review X, 2024 - APS
Computational modeling of assembly is challenging for many systems, because their
timescales can vastly exceed those accessible to simulations. This article describes the …

Viral structural proteins as targets for antivirals

CJ Schlicksup, A Zlotnick - Current opinion in virology, 2020 - Elsevier
Viral structural proteins are emerging as effective targets for new antivirals. In a viral
lifecycle, the capsid must assemble, disassemble, and respond to host proteins, all at the …

Local stabilization of subunit–subunit contacts causes global destabilization of hepatitis B virus capsids

CJ Schlicksup, P Laughlin, S Dunkelbarger… - ACS chemical …, 2020 - ACS Publications
Development of antiviral molecules that bind virion is a strategy that remains in its infancy,
and the details of their mechanisms are poorly understood. Here we investigate the behavior …