Genome structural variation discovery and genoty**

C Alkan, BP Coe, EE Eichler - Nature reviews genetics, 2011 - nature.com
Comparisons of human genomes show that more base pairs are altered as a result of
structural variation—including copy number variation—than as a result of point mutations …

Cancer genomics: technology, discovery, and translation

B Tran, JE Dancey, S Kamel-Reid… - Journal of Clinical …, 2012 - ascopubs.org
In recent years, the increasing awareness that somatic mutations and other genetic
aberrations drive human malignancies has led us within reach of personalized cancer …

Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants

D Pinto, K Darvishi, X Shi, D Rajan, D Rigler… - Nature …, 2011 - nature.com
We have systematically compared copy number variant (CNV) detection on eleven
microarrays to evaluate data quality and CNV calling, reproducibility, concordance across …

CopywriteR: DNA copy number detection from off-target sequence data

T Kuilman, A Velds, K Kemper, M Ranzani… - Genome biology, 2015 - Springer
Current methods for detection of copy number variants (CNV) and aberrations (CNA) from
targeted sequencing data are based on the depth of coverage of captured exons. Accurate …

A discovery resource of rare copy number variations in individuals with autism spectrum disorder

A Prasad, D Merico… - G3: Genes …, 2012 - academic.oup.com
The identification of rare inherited and de novo copy number variations (CNVs) in human
subjects has proven a productive approach to highlight risk genes for autism spectrum …

Genomic amplifications and distal 6q loss: novel markers for poor survival in high-risk neuroblastoma patients

P Depuydt, V Boeva, TD Hocking… - JNCI: Journal of the …, 2018 - academic.oup.com
Background Neuroblastoma is characterized by substantial clinical heterogeneity. Despite
intensive treatment, the survival rates of high-risk neuroblastoma patients are still …

Copy number variation in the genomes of domestic animals

A Clop, O Vidal, M Amills - Animal genetics, 2012 - Wiley Online Library
Copy number variation (CNV) might be one of the main contributors to phenotypic diversity
and evolutionary adaptation in animals and plants, employing a wide variety of mechanisms …

Chromosomes in the flow to simplify genome analysis

J Doležel, J Vrána, J Šafář, J Bartoš… - Functional & integrative …, 2012 - Springer
Nuclear genomes of human, animals, and plants are organized into subunits called
chromosomes. When isolated into aqueous suspension, mitotic chromosomes can be …

Male-biased autosomal effect of 16p13. 11 copy number variation in neurodevelopmental disorders

M Tropeano, JW Ahn, RJB Dobson, G Breen, J Rucker… - PloS one, 2013 - journals.plos.org
Copy number variants (CNVs) at chromosome 16p13. 11 have been associated with a
range of neurodevelopmental disorders including autism, ADHD, intellectual disability and …

Genomic architecture characterizes tumor progression paths and fate in breast cancer patients

HG Russnes, HKM Vollan, OC Lingjærde… - Science translational …, 2010 - science.org
Distinct molecular subtypes of breast carcinomas have been identified, but translation into
clinical use has been limited. We have developed two platform-independent algorithms to …