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Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
The genomic revolution has fundamentally changed how we survey biodiversity on earth.
High‐throughput sequencing (“HTS”) platforms now enable the rapid sequencing of DNA …
High‐throughput sequencing (“HTS”) platforms now enable the rapid sequencing of DNA …
Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis
The purpose of this review is to present the most common and emerging DNA‐based
methods used to generate data for biodiversity and biomonitoring studies. As environmental …
methods used to generate data for biodiversity and biomonitoring studies. As environmental …
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …
second largest group of organisms based on global richness estimates, with around 3 …
Scrutinizing key steps for reliable metabarcoding of environmental samples
Metabarcoding of environmental samples has many challenges and limitations that require
carefully considered laboratory and analysis workflows to ensure reliable results. We …
carefully considered laboratory and analysis workflows to ensure reliable results. We …
DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity
Documenting the diversity of marine life is challenging because many species are cryptic,
small, and rare, and belong to poorly known groups. New sequencing technologies …
small, and rare, and belong to poorly known groups. New sequencing technologies …
Fifty thousand years of Arctic vegetation and megafaunal diet
Although it is generally agreed that the Arctic flora is among the youngest and least diverse
on Earth, the processes that shaped it are poorly understood. Here we present 50 thousand …
on Earth, the processes that shaped it are poorly understood. Here we present 50 thousand …
Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
To manage and conserve biodiversity, one must know what is being lost, where, and why, as
well as which remedies are likely to be most effective. Metabarcoding technology can …
well as which remedies are likely to be most effective. Metabarcoding technology can …
Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
Traditional biodiversity assessment is costly in time, money and taxonomic expertise.
Moreover, data are frequently collected in ways (eg visual bird lists) that are unsuitable for …
Moreover, data are frequently collected in ways (eg visual bird lists) that are unsuitable for …
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background Likelihood-based phylogenetic inference is generally considered to be the most
reliable classification method for unknown sequences. However, traditional likelihood-based …
reliable classification method for unknown sequences. However, traditional likelihood-based …
Ancient and modern environmental DNA
MW Pedersen… - … of the Royal …, 2015 - royalsocietypublishing.org
DNA obtained from environmental samples such as sediments, ice or water (environmental
DNA, eDNA), represents an important source of information on past and present biodiversity …
DNA, eDNA), represents an important source of information on past and present biodiversity …