A field guide to eukaryotic transposable elements
Transposable elements (TEs) are mobile DNA sequences that propagate within genomes.
Through diverse invasion strategies, TEs have come to occupy a substantial fraction of …
Through diverse invasion strategies, TEs have come to occupy a substantial fraction of …
Repetitive DNA sequence detection and its role in the human genome
Repetitive DNA sequences playing critical roles in driving evolution, inducing variation, and
regulating gene expression. In this review, we summarized the definition, arrangement, and …
regulating gene expression. In this review, we summarized the definition, arrangement, and …
Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2
RepeatExplorer2 is a novel version of a computational pipeline that uses graph-based
clustering of next-generation sequencing reads for characterization of repetitive DNA in …
clustering of next-generation sequencing reads for characterization of repetitive DNA in …
The giant diploid faba genome unlocks variation in a global protein crop
Increasing the proportion of locally produced plant protein in currently meat-rich diets could
substantially reduce greenhouse gas emissions and loss of biodiversity. However, plant …
substantially reduce greenhouse gas emissions and loss of biodiversity. However, plant …
Repeat-based holocentromeres influence genome architecture and karyotype evolution
The centromere represents a single region in most eukaryotic chromosomes. However,
several plant and animal lineages assemble holocentromeres along the entire chromosome …
several plant and animal lineages assemble holocentromeres along the entire chromosome …
TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
RG Zhang, GY Li, XL Wang, J Dainat… - Horticulture …, 2022 - academic.oup.com
Dear Editor, Transposable elements (TEs) constitute the largest portion of repetitive
sequences in many eukaryotic genomes, with long terminal repeat retrotransposons (LTR …
sequences in many eukaryotic genomes, with long terminal repeat retrotransposons (LTR …
The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization
Sturgeons seem to be frozen in time. The archaic characteristics of this ancient fish lineage
place it in a key phylogenetic position at the base of the~ 30,000 modern teleost fish …
place it in a key phylogenetic position at the base of the~ 30,000 modern teleost fish …
A beginner's guide to manual curation of transposable elements
Background In the study of transposable elements (TEs), the generation of a high
confidence set of consensus sequences that represent the diversity of TEs found in a given …
confidence set of consensus sequences that represent the diversity of TEs found in a given …
Genome sequencing reveals the genetic architecture of heterostyly and domestication history of common buckwheat
Common buckwheat, Fagopyrum esculentum, is an orphan crop domesticated in southwest
China that exhibits heterostylous self-incompatibility. Here we present chromosome-scale …
China that exhibits heterostylous self-incompatibility. Here we present chromosome-scale …
A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome
It is only recently, with the advent of long-read sequencing technologies, that we are
beginning to uncover previously uncharted regions of complex and inherently recursive …
beginning to uncover previously uncharted regions of complex and inherently recursive …