A logical and graphical framework for reaction systems
Abstract Reaction Systems (RSs) are a successful computational framework inspired by
biological systems. A RS pairs a set of entities with a set of reactions over them. Entities can …
biological systems. A RS pairs a set of entities with a set of reactions over them. Entities can …
Controllability of reaction systems
Controlling a dynamical system is the ability of changing its configuration arbitrarily through
a suitable choice of inputs. It is a very well-studied concept in control theory, with wide …
a suitable choice of inputs. It is a very well-studied concept in control theory, with wide …
Expressive rule-based modeling and fast simulation for dynamic compartments
Compartmentalization is vital for cell biological processes. The field of rule-based stochastic
simulation has acknowledged this, and many tools and methods have capabilities for …
simulation has acknowledged this, and many tools and methods have capabilities for …
Simulation of reaction systems by the strictly minimal ones
WC Teh, A Atanasiu - Journal of Membrane Computing, 2020 - Springer
Reaction systems, introduced by Ehrenfeucht and Rozenberg, are elementary
computational models based on biochemical reactions transpiring within the living cells …
computational models based on biochemical reactions transpiring within the living cells …
A framework for monitored dynamic slicing of reaction systems
Reaction systems (RSs) are a computational framework inspired by biochemical
mechanisms. A RS defines a finite set of reactions over a finite set of entities. Typically each …
mechanisms. A RS defines a finite set of reactions over a finite set of entities. Typically each …
[HTML][HTML] FPGA Implementation of Reaction Systems
Z Shang, S Verlan, J Lu, Z Wei, M Zhou - Electronics, 2024 - mdpi.com
Reaction system (RS) belongs to a type of qualitative computing model inspired by
biochemical reactions taking place inside biological cells. It concerns more the interactions …
biochemical reactions taking place inside biological cells. It concerns more the interactions …
[PDF][PDF] Reaction systems for modeling and validation of biological signaling pathways: G1/s checkpoint of the cell cycle
Reaction Systems modeling is a compact, discrete, and qualitative modeling method for
dynamic systems, including biochemical systems. In this paper, the G1/S checkpoint of the …
dynamic systems, including biochemical systems. In this paper, the G1/S checkpoint of the …
Modeling and Analyzing Reaction Systems in Maude
Reaction Systems (RSs) are a successful computational framework for modeling systems
inspired by biochemistry. An RS defines a set of rules (reactions) over a finite set of entities …
inspired by biochemistry. An RS defines a set of rules (reactions) over a finite set of entities …
Reaction systems and synchronous digital circuits
A reaction system is a modeling framework for investigating the functioning of the living cell,
focused on capturing cause–effect relationships in biochemical environments. Biochemical …
focused on capturing cause–effect relationships in biochemical environments. Biochemical …
The many roads to the simulation of reaction systems
Reaction systems are a computational model inspired by the bio-chemical reactions that
happen inside biological cells. They have been and currently are studied for their many nice …
happen inside biological cells. They have been and currently are studied for their many nice …