The transformational role of GPU computing and deep learning in drug discovery

M Pandey, M Fernandez, F Gentile, O Isayev… - Nature Machine …, 2022 - nature.com
Deep learning has disrupted nearly every field of research, including those of direct
importance to drug discovery, such as medicinal chemistry and pharmacology. This …

A review of molecular representation in the age of machine learning

DS Wigh, JM Goodman… - Wiley Interdisciplinary …, 2022 - Wiley Online Library
Research in chemistry increasingly requires interdisciplinary work prompted by, among
other things, advances in computing, machine learning, and artificial intelligence. Everyone …

Reinforcement learning in healthcare: A survey

C Yu, J Liu, S Nemati, G Yin - ACM Computing Surveys (CSUR), 2021 - dl.acm.org
As a subfield of machine learning, reinforcement learning (RL) aims at optimizing decision
making by using interaction samples of an agent with its environment and the potentially …

Graphaf: a flow-based autoregressive model for molecular graph generation

C Shi, M Xu, Z Zhu, W Zhang, M Zhang… - arxiv preprint arxiv …, 2020 - arxiv.org
Molecular graph generation is a fundamental problem for drug discovery and has been
attracting growing attention. The problem is challenging since it requires not only generating …

Deep learning for molecular design—a review of the state of the art

DC Elton, Z Boukouvalas, MD Fuge… - … Systems Design & …, 2019 - pubs.rsc.org
In the space of only a few years, deep generative modeling has revolutionized how we think
of artificial creativity, yielding autonomous systems which produce original images, music …

GuacaMol: benchmarking models for de novo molecular design

N Brown, M Fiscato, MHS Segler… - Journal of chemical …, 2019 - ACS Publications
De novo design seeks to generate molecules with required property profiles by virtual
design-make-test cycles. With the emergence of deep learning and neural generative …

Constrained graph variational autoencoders for molecule design

Q Liu, M Allamanis… - Advances in neural …, 2018 - proceedings.neurips.cc
Graphs are ubiquitous data structures for representing interactions between entities. With an
emphasis on applications in chemistry, we explore the task of learning to generate graphs …

Artificial intelligence in drug discovery: applications and techniques

J Deng, Z Yang, I Ojima, D Samaras… - Briefings in …, 2022 - academic.oup.com
Artificial intelligence (AI) has been transforming the practice of drug discovery in the past
decade. Various AI techniques have been used in many drug discovery applications, such …

Computer-aided multi-objective optimization in small molecule discovery

JC Fromer, CW Coley - Patterns, 2023 - cell.com
Molecular discovery is a multi-objective optimization problem that requires identifying a
molecule or set of molecules that balance multiple, often competing, properties. Multi …

A graph-based genetic algorithm and generative model/Monte Carlo tree search for the exploration of chemical space

JH Jensen - Chemical science, 2019 - pubs.rsc.org
This paper presents a comparison of a graph-based genetic algorithm (GB-GA) and
machine learning (ML) results for the optimization of log P values with a constraint for …