Cell and molecular mechanics of biological materials

G Bao, S Suresh - Nature materials, 2003 - nature.com
Living cells can sense mechanical forces and convert them into biological responses.
Similarly, biological and biochemical signals are known to influence the abilities of cells to …

Activating transcription in bacteria

DJ Lee, SD Minchin, SJW Busby - Annual review of microbiology, 2012 - annualreviews.org
Bacteria use a variety of mechanisms to direct RNA polymerase to specific promoters in
order to activate transcription in response to growth signals or environmental cues …

Architecture of the Escherichia coli nucleoid

SC Verma, Z Qian, SL Adhya - PLoS genetics, 2019 - journals.plos.org
How genomes are organized within cells and how the 3D architecture of a genome
influences cellular functions are significant questions in biology. A bacterial genomic DNA …

[Књига][B] DNA topology

AD Bates, A Maxwell - 2005 - books.google.com
DNA as the genetic material is a topic of intense interest in the 21st century, with the
genomes of many organisms having been sequenced. The double helix structure …

DNA supercoiling—a global transcriptional regulator for enterobacterial growth?

A Travers, G Muskhelishvili - Nature Reviews Microbiology, 2005 - nature.com
A fundamental principle of exponential bacterial growth is that no more ribosomes are
produced than are necessary to support the balance between nutrient availability and …

Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom

HM Amemiya, J Schroeder, L Freddolino - Transcription, 2021 - Taylor & Francis
Genome architecture has proven to be critical in determining gene regulation across almost
all domains of life. While many of the key components and mechanisms of eukaryotic …

Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts

BK Cho, EM Knight, CL Barrett, BØ Palsson - Genome research, 2008 - genome.cshlp.org
We determined the genome-wide distribution of the nucleoid-associated protein Fis in
Escherichia coli using chromatin immunoprecipitation coupled with high-resolution whole …

Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome

N Blot, R Mavathur, M Geertz, A Travers… - EMBO …, 2006 - embopress.org
Regulation of cellular growth implies spatiotemporally coordinated programmes of gene
transcription. A central question, therefore, is how global transcription is coordinated in the …

Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA

JS Graham, RC Johnson, JF Marko - Nucleic acids research, 2011 - academic.oup.com
The multistep kinetics through which DNA-binding proteins bind their targets are heavily
studied, but relatively little attention has been paid to proteins leaving the double helix …

A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli

R Schneider, A Travers, T Kutateladze… - Molecular …, 1999 - Wiley Online Library
In Escherichia coli, the transcriptional activity of many promoters is strongly dependent on
the negative superhelical density of chromosomal DNA. This, in turn, varies with the growth …