[HTML][HTML] Species delimitation 4.0: integrative taxonomy meets artificial intelligence

K Karbstein, L Kösters, L Hodač, M Hofmann… - Trends in Ecology & …, 2024 - cell.com
Although species are central units for biological research, recent findings in genomics are
raising awareness that what we call species can be ill-founded entities due to solely …

A guide to carrying out a phylogenomic target sequence capture project

T Andermann, MF Torres Jiménez… - Frontiers in …, 2020 - frontiersin.org
High-throughput DNA sequencing techniques enable time-and cost-effective sequencing of
large portions of the genome. Instead of sequencing and annotating whole genomes, many …

Untying Gordian knots: unraveling reticulate polyploid plant evolution by genomic data using the large Ranunculus auricomus species complex

K Karbstein, S Tomasello, L Hodač, N Wagner… - New …, 2022 - Wiley Online Library
Speciation via hybridization and polyploidization is a major evolutionary force in plant
evolution but is still poorly understood for neopolyploid groups. Challenges are attributed to …

Phylogenomic relationships and evolution of polyploid Salix species revealed by RAD sequencing data

ND Wagner, L He, E Hörandl - Frontiers in Plant Science, 2020 - frontiersin.org
Polyploidy is common in the genus Salix. However, little is known about the origin,
parentage and genomic composition of polyploid species because of a lack of suitable …

Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics

GA Bravo, A Antonelli, CD Bacon, K Bartoszek… - PeerJ, 2019 - peerj.com
ABSTRACT Building the Tree of Life (ToL) is a major challenge of modern biology, requiring
advances in cyberinfrastructure, data collection, theory, and more. Here, we argue that …

Rainfall and sea level drove the expansion of seasonally flooded habitats and associated bird populations across Amazonia

AO Sawakuchi, ED Schultz, FN Pupim… - Nature …, 2022 - nature.com
Spatial arrangement of distinct Amazonian environments through time and its effect on
specialized biota remain poorly known, fueling long-lasting debates about drivers of biotic …

Understanding UCEs: a comprehensive primer on using ultraconserved elements for arthropod phylogenomics

YM Zhang, JL Williams, A Lucky - Insect Systematics and …, 2019 - academic.oup.com
Targeted enrichment of ultraconserved elements (UCEs) has emerged as a promising tool
for inferring evolutionary history in many taxa, with utility ranging from phylogenetic and …

Resolving the avian tree of life from top to bottom: the promise and potential boundaries of the phylogenomic era

EL Braun, J Cracraft, P Houde - Avian genomics in ecology and evolution …, 2019 - Springer
Reconstructing relationships among extant birds (Neornithes) has been one of the most
difficult problems in phylogenetics, and, despite intensive effort, the avian tree of life remains …

[HTML][HTML] Phylogenetic insights into the Salicaceae: the evolution of willows and beyond

E Ogutcen, P de Lima Ferreira, ND Wagner… - Molecular Phylogenetics …, 2024 - Elsevier
The Salicaceae includes approximately 54 genera and over 1,400 species with a
cosmopolitan distribution. Members of the family are well-known for their diverse secondary …

Solving the coral species delimitation conundrum

C Ramírez-Portilla, AH Baird, PF Cowman… - Systematic …, 2022 - academic.oup.com
Distinguishing coral species is not only crucial for physiological, ecological, and
evolutionary studies but also to enable effective management of threatened reef …