Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

[HTML][HTML] Origin, dynamics, and implications of extracellular DNA pools in marine sediments

A Torti, MA Lever, BB Jørgensen - Marine genomics, 2015 - Elsevier
In marine sediments, DNA occurs both inside and outside living organisms. DNA not
enclosed in living cells may account for the largest fraction of total DNA, and include …

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

P Carini, PJ Marsden, JW Leff, EE Morgan… - Nature …, 2016 - nature.com
Extracellular DNA from dead microorganisms can persist in soil for weeks to years 1–3.
Although it is implicitly assumed that the microbial DNA recovered from soil predominantly …

Environmental DNA time series in ecology

M Bálint, M Pfenninger, HP Grossart, P Taberlet… - Trends in Ecology & …, 2018 - cell.com
Ecological communities change in time and space, but long-term dynamics at the century-to-
millennia scale are poorly documented due to lack of relevant data sets. Nevertheless …

Ancient biomolecules: their origins, fossilization, and role in revealing the history of life

DEG Briggs, RE Summons - BioEssays, 2014 - Wiley Online Library
The discovery of traces of a blood meal in the abdomen of a 50‐million‐year‐old mosquito
reminds us of the insights that the chemistry of fossils can provide. Ancient DNA is the best …

DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity

I Domaizon, A Winegardner, E Capo, J Gauthier… - Journal of …, 2017 - Springer
The emergence of DNA analyses of lake sediments has opened up many new areas of
inquiry, including the study of taxa that were traditionally not considered in paleolimnology …

Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential

E Capo, ME Monchamp, MJL Coolen… - Environmental …, 2022 - Wiley Online Library
In‐depth knowledge about spatial and temporal variation in microbial diversity and function
is needed for a better understanding of ecological and evolutionary responses to global …

Assessing the response of micro-eukaryotic diversity to the Great Acceleration using lake sedimentary DNA

F Keck, L Millet, D Debroas, D Etienne, D Galop… - Nature …, 2020 - nature.com
Long-term time series have provided evidence that anthropogenic pressures can threaten
lakes. Yet it remains unclear how and the extent to which lake biodiversity has changed …

Sedimentary ancient DNA: a new paleogenomic tool for reconstructing the history of marine ecosystems

NL Nguyen, D Devendra, N Szymańska… - Frontiers in Marine …, 2023 - frontiersin.org
Sedimentary ancient DNA (seda DNA) offers a novel retrospective approach to
reconstructing the history of marine ecosystems over geological timescales. Until now, the …