Harnessing the power of RADseq for ecological and evolutionary genomics

KR Andrews, JM Good, MR Miller, G Luikart… - Nature Reviews …, 2016 - nature.com
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genoty** of thousands of genetic markers for any …

DNA molecular markers in plant breeding: current status and recent advancements in genomic selection and genome editing

MA Nadeem, MA Nawaz, MQ Shahid… - Biotechnology & …, 2018 - Taylor & Francis
With the development of molecular marker technology in the 1980s, the fate of plant
breeding has changed. Different types of molecular markers have been developed and …

ipyrad: Interactive assembly and analysis of RADseq datasets

DAR Eaton, I Overcast - Bioinformatics, 2020 - academic.oup.com
Abstract Summary ipyrad is a free and open source tool for assembling and analyzing
restriction site-associated DNA sequence datasets using de novo and/or reference-based …

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

C Zhang, SS Dong, JY Xu, WM He, TL Yang - Bioinformatics, 2019 - academic.oup.com
Motivation Linkage disequilibrium (LD) decay is of great interest in population genetic
studies. However, no tool is available now to do LD decay analysis from variant call format …

Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics

NC Rochette, AG Rivera‐Colón… - Molecular ecology, 2019 - Wiley Online Library
For half a century population genetics studies have put type II restriction endonucleases to
work. Now, coupled with massively‐parallel, short‐read sequencing, the family of RAD …

Stacks: an analysis tool set for population genomics

J Catchen, PA Hohenlohe, S Bassham… - Molecular …, 2013 - Wiley Online Library
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …

TASSEL-GBS: a high capacity genoty** by sequencing analysis pipeline

JC Glaubitz, TM Casstevens, F Lu, J Harriman… - PloS one, 2014 - journals.plos.org
Genoty** by sequencing (GBS) is a next generation sequencing based method that takes
advantage of reduced representation to enable high throughput genoty** of large …

Development of high-density genetic maps for barley and wheat using a novel two-enzyme genoty**-by-sequencing approach

JA Poland, PJ Brown, ME Sorrells, JL Jannink - PloS one, 2012 - journals.plos.org
Advancements in next-generation sequencing technology have enabled whole genome re-
sequencing in many species providing unprecedented discovery and characterization of …

Cultivation, Genetic, Ethnopharmacology, Phytochemistry and Pharmacology of Moringa oleifera Leaves: An Overview

A Leone, A Spada, A Battezzati, A Schiraldi… - International journal of …, 2015 - mdpi.com
Moringa oleifera is an interesting plant for its use in bioactive compounds. In this manuscript,
we review studies concerning the cultivation and production of moringa along with genetic …

[BOOK][B] Migration: the biology of life on the move

H Dingle - 2014 - books.google.com
Migration, broadly defined as directional movement to take advantage of spatially distributed
resources, is a dramatic behaviour and an important component of many life histories that …